Search Results - "Albrecht, A.A."

Population-based local search for protein folding simulation in the MJ energy model and cubic lattices by Kapsokalivas, L., Gan, X., Albrecht, A.A., Steinhöfel, K.

“…We present experimental results on benchmark problems in 3D cubic lattice structures with the Miyazawa–Jernigan energy function for two local search procedures…”
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Approximating the set of local minima in partial RNA folding landscapes by Sahoo, S., Albrecht, A.A.

“…Motivation: We study a stochastic method for approximating the set of local minima in partial RNA folding landscapes associated with a bounded-distance…”
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Relating time complexity of protein folding simulation to approximations of folding time by Steinhöfel, K., Skaliotis, A., Albrecht, A.A.

“…Finkelstein and Badretdinov [A.V. Finkelstein, A.Y. Badretdinov, Rate of protein folding near the point of thermodynamic equilibrium between the coil and the…”
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Stochastic protein folding simulation in the three-dimensional HP-model by Albrecht, A.A., Skaliotis, A., Steinhöfel, K.

“…We present results from three-dimensional protein folding simulations in the HP-model on ten benchmark problems. The simulations are executed by a simulated…”
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Genetic local search for multicast routing with pre-processing by logarithmic simulated annealing by Zahrani, M.S., Loomes, M.J., Malcolm, J.A., Dayem Ullah, A.Z.M., Steinhöfel, K., Albrecht, A.A.

“…Over the past few years, several local search algorithms have been proposed for various problems related to multicast routing in the off-line mode. We describe…”
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Uphill unfolding of native protein conformations in cubic lattices by Albrecht, A.A., Kapsokalivas, L., Steinhöfel, K.

“…We present results from simulations of unfolding in cubic lattices with two types of simplified energy functions, namely the Miyazawa–Jernigan (MJ) energy…”
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Landscape analysis for multicast routing by Zahrani, M.S., Loomes, M.J., Malcolm, J.A., Albrecht, A.A.

“…In recent years, methods based on local search have been utilized in off-line algorithms for multicast routing in communication networks. In multicast routing,…”
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Combinatorial Landscape Analysis for k-SAT Instances by Albrecht, A.A., Lane, P.C.R., Steinhofel, K.

“…Over the past ten years, methods from statistical physics have provided a deeper inside into the average complexity of hard combinatorial problems, culminating…”
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Two applications of the LSA machine by Albrecht, A.A., Lappas, G., Vinterbo, S.A., Wong, C., Ohno-Machado, L.

“…We present two applications of a learning algorithm that combines logarithmic simulated annealing with the perceptron algorithm. The implementation of the…”
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