Search Results - "Akpinar, Bala"

A Comprehensive Prescription for Plant miRNA Identification by Alptekin, Burcu, Akpinar, Bala A, Budak, Hikmet

“…microRNAs (miRNAs) are tiny ribo-regulatory molecules involved in various essential pathways for persistence of cellular life, such as development,…”
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Identification of the VERNALIZATION 4 gene reveals the origin of spring growth habit in ancient wheats from South Asia by Kippes, Nestor, Debernardi, Juan M, Vasquez-Gross, Hans A, Akpinar, Bala A, Budak, Hikment, Kato, Kenji, Chao, Shiaoman, Akhunov, Eduard, Dubcovsky, Jorge

“…Wheat varieties with a winter growth habit require long exposures to low temperatures (vernalization) to accelerate flowering. Natural variation in four…”
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Multiple Variant Calling Pipelines in Wheat Whole Exome Sequencing by Cagirici, H., Akpinar, Bala, Sen, Taner, Budak, Hikmet

“…The highly challenging hexaploid wheat (Triticum aestivum) genome is becoming ever more accessible due to the continued development of multiple reference…”
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Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii by Akpinar, Bala A, Budak, Hikmet

“…As the post-transcriptional regulators of gene expression, microRNAs or miRNAs comprise an integral part of understanding how genomes function. Although miRNAs…”
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Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications by Lucas, Stuart J, Akpınar, Bala Anı, Šimková, Hana, Kubaláková, Marie, Doležel, Jaroslav, Budak, Hikmet

“…The ~17 Gb hexaploid bread wheat genome is a high priority and a major technical challenge for genomic studies. In particular, the D sub-genome is relatively…”
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Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress by Akpinar, Bala Ani, Kantar, Melda, Budak, Hikmet

“…MicroRNAs, small regulatory molecules with significant impacts on the transcriptional network of all living organisms, have been the focus of several studies…”
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Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides by Ani Akpinar, Bala, Yuce, Meral, Lucas, Stuart, Vrána, Jan, Burešová, Veronika, Doležel, Jaroslav, Budak, Hikmet

“…Wild emmer wheat, Triticum turgidum ssp. dicoccoides is the wild relative of Triticum turgidum , the progenitor of durum and bread wheat and maintains a rich…”
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Sequencing chromosome 5D of Aegilops tauschii and comparison with its allopolyploid descendant bread wheat (Triticum aestivum) by Akpinar, Bala A, Lucas, Stuart J, Vrána, Jan, Doležel, Jaroslav, Budak, Hikmet

“…Flow cytometric sorting of individual chromosomes and chromosome-based sequencing reduces the complexity of large, repetitive Triticeae genomes. We flow-sorted…”
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The complete genome sequence of elite bread wheat cultivar, "Sonmez" [version 1; peer review: 3 approved] by Akpinar, Bala Ani, Leroy, Philippe, Watson-Haigh, Nathan, Baumann, Ute, Barbe, Valerie, Budak, Hikmet

“…High-yielding crop varieties will become critical in meeting the future food demand in the face of worsening weather extremes and threatening biotic stressors…”
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Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A by Lucas, Stuart J, Akpınar, Bala Anı, Kantar, Melda, Weinstein, Zohar, Aydınoğlu, Fatma, Safář, Jan, Simková, Hana, Frenkel, Zeev, Korol, Abraham, Magni, Federica, Cattonaro, Federica, Vautrin, Sonia, Bellec, Arnaud, Bergès, Hélène, Doležel, Jaroslav, Budak, Hikmet

“…Bread wheat (Triticum aestivum L.) is one of the most important crops worldwide and its production faces pressing challenges, the solution of which demands…”
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Comparative Analysis of Coding and Non-Coding Features within Insect Tolerance Loci in Wheat with Their Homologs in Cereal Genomes by Muslu, Tugdem, Akpinar, Bala Ani, Biyiklioglu-Kaya, Sezgi, Yuce, Meral, Budak, Hikmet

“…Food insecurity and malnutrition have reached critical levels with increased human population, climate fluctuations, water shortage; therefore, higher-yielding…”
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Wheat Long Noncoding RNAs from Organelle and Nuclear Genomes Carry Conserved microRNA Precursors Which May Together Comprise Intricate Networks in Insect Responses by Akpinar, Bala Ani, Muslu, Tugdem, Reddy, Gadi V P, Dogramaci, Munevver, Budak, Hikmet

“…Long noncoding RNAs (lncRNAs) are a diverse class of noncoding RNAs that are typically longer than 200 nucleotides but lack coding potentials. Advances in deep…”
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Autophagy-related gene, TdAtg8, in wild emmer wheat plays a role in drought and osmotic stress response by KUZUOGLU-OZTURK, Duygu, CEBECI YALCINKAYA, Ozge, ANI AKPINAR, Bala, MITOU, Geraldine, KORKMAZ, Gozde, GOZUACIK, Devrim, BUDAK, Hikmet

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Pan-Genome miRNomics in Brachypodium by Muslu, Tugdem, Biyiklioglu-Kaya, Sezgi, Akpinar, Bala Ani, Yuce, Meral, Budak, Hikmet

“…Pan-genomes are efficient tools for the identification of conserved and varying genomic sequences within lineages of a species. Investigating genetic…”
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The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements by Akpinar, Bala Ani, Magni, Federica, Yuce, Meral, Lucas, Stuart J, Šimková, Hana, Šafář, Jan, Vautrin, Sonia, Bergès, Hélène, Cattonaro, Federica, Doležel, Jaroslav, Budak, Hikmet

“…The substantially large bread wheat genome, organized into highly similar three sub-genomes, renders genomic research challenging. The construction of…”
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OMICs, Epigenetics, and Genome Editing Techniques for Food and Nutritional Security by Gogolev, Yuri V., Ahmar, Sunny, Akpinar, Bala Ani, Budak, Hikmet, Kiryushkin, Alexey S., Gorshkov, Vladimir Y., Hensel, Goetz, Demchenko, Kirill N., Kovalchuk, Igor, Mora-Poblete, Freddy, Muslu, Tugdem, Tsers, Ivan D., Yadav, Narendra Singh, Korzun, Viktor

“…The incredible success of crop breeding and agricultural innovation in the last century greatly contributed to the Green Revolution, which significantly…”
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Proteome changes in wild and modern wheat leaves upon drought stress by two-dimensional electrophoresis and nanoLC-ESI–MS/MS by Budak, Hikmet, Akpinar, Bala Ani, Unver, Turgay, Turktas, Mine

“…To elucidate differentially expressed proteins and to further understand post-translational modifications of transcripts, full leaf proteome profiles of two…”
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The drought response displayed by a DRE-binding protein from Triticum dicoccoides by Lucas, Stuart, Durmaz, Emel, Akpınar, Bala Anı, Budak, Hikmet

“…Drought is one of the major causes of dramatic yield loss in crop plants. Knowledge of how to alleviate this loss is still limited due to the complexity of…”
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Proteome changes in wild and modern wheat leaves upon drought stress by two-dimensional electrophoresis and nanoLC-ESI–MS/MS by Budak, Hikmet, Akpinar, Bala Ani, Unver, Turgay, Turktas, Mine

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A large-scale chromosome-specific SNP discovery guideline by Akpinar, Bala Ani, Lucas, Stuart, Budak, Hikmet

“…Single-nucleotide polymorphisms (SNPs) are the most prevalent type of variation in genomes that are increasingly being used as molecular markers in diversity…”
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