Search Results - "Akdemir, Deniz"

Design of training populations for selective phenotyping in genomic prediction by Akdemir, Deniz, Isidro-Sánchez, Julio

“…Phenotyping is the current bottleneck in plant breeding, especially because next-generation sequencing has decreased genotyping cost more than 100.000 fold in…”
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Training Set Optimization for Sparse Phenotyping in Genomic Selection: A Conceptual Overview by Isidro y Sánchez, Julio, Akdemir, Deniz

“…Genomic selection (GS) is becoming an essential tool in breeding programs due to its role in increasing genetic gain per unit time. The design of the training…”
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Genomic selection and association mapping in rice (Oryza sativa): effect of trait genetic architecture, training population composition, marker number and statistical model on accuracy of rice genomic selection in elite, tropical rice breeding lines by Spindel, Jennifer, Begum, Hasina, Akdemir, Deniz, Virk, Parminder, Collard, Bertrand, Redoña, Edilberto, Atlin, Gary, Jannink, Jean-Luc, McCouch, Susan R

“…Genomic Selection (GS) is a new breeding method in which genome-wide markers are used to predict the breeding value of individuals in a breeding population. GS…”
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Multi-objective optimized genomic breeding strategies for sustainable food improvement by Akdemir, Deniz, Beavis, William, Fritsche-Neto, Roberto, Singh, Asheesh K, Isidro-Sánchez, Julio

“…The purpose of breeding programs is to obtain sustainable gains in multiple traits while controlling the loss of genetic variation. The decisions at each…”
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Efficient Breeding by Genomic Mating by Akdemir, Deniz, Sánchez, Julio I

“…Selection in breeding programs can be done by using phenotypes (phenotypic selection), pedigree relationship (breeding value selection) or molecular markers…”
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Assessment of genomic prediction reliability and optimization of experimental designs in multi-environment trials by Rio, Simon, Akdemir, Deniz, Carvalho, Tiago, Sánchez, Julio Isidro y

“…Key message New forms of the coefficient of determination can help to forecast the accuracy of genomic prediction and optimize experimental designs in…”
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TrainSel: An R Package for Selection of Training Populations by Akdemir, Deniz, Rio, Simon, Isidro Y Sánchez, Julio

“…A major barrier to the wider use of supervised learning in emerging applications, such as genomic selection, is the lack of sufficient and representative…”
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Breeding Value of Primary Synthetic Wheat Genotypes for Grain Yield by Jafarzadeh, Jafar, Bonnett, David, Jannink, Jean-Luc, Akdemir, Deniz, Dreisigacker, Susanne, Sorrells, Mark E

“…To introduce new genetic diversity into the bread wheat gene pool from its progenitor, Aegilops tauschii (Coss.) Schmalh, 33 primary synthetic hexaploid wheat…”
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Accuracies of univariate and multivariate genomic prediction models in African cassava by Okeke, Uche Godfrey, Akdemir, Deniz, Rabbi, Ismail, Kulakow, Peter, Jannink, Jean-Luc

“…Genomic selection (GS) promises to accelerate genetic gain in plant breeding programs especially for crop species such as cassava that have long breeding…”
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Combining Partially Overlapping Multi-Omics Data in Databases Using Relationship Matrices by Akdemir, Deniz, Knox, Ron, Isidro y Sánchez, Julio

“…Private and public breeding programs, as well as companies and universities, have developed different genomics technologies that have resulted in the…”
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Genomic Prediction of Gene Bank Wheat Landraces by Crossa, José, Jarquín, Diego, Franco, Jorge, Pérez-Rodríguez, Paulino, Burgueño, Juan, Saint-Pierre, Carolina, Vikram, Prashant, Sansaloni, Carolina, Petroli, Cesar, Akdemir, Deniz, Sneller, Clay, Reynolds, Matthew, Tattaris, Maria, Payne, Thomas, Guzman, Carlos, Peña, Roberto J, Wenzl, Peter, Singh, Sukhwinder

“…This study examines genomic prediction within 8416 Mexican landrace accessions and 2403 Iranian landrace accessions stored in gene banks. The Mexican and…”
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Linkage and QTL mapping for tuber shape and specific gravity in a tetraploid mapping population of potato representing the russet market class by Park, Jaebum, Massa, Alicia N, Douches, David, Coombs, Joseph, Akdemir, Deniz, Yencho, G Craig, Whitworth, Jonathan L, Novy, Richard G

“…Tuber shape and specific gravity (dry matter) are important agronomic traits in potato processing and impact production costs, quality, and consistency of the…”
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Genetic gain and inbreeding from simulation of different genomic mating schemes for pig improvement by Zhao, Fuping, Zhang, Pengfei, Wang, Xiaoqing, Akdemir, Deniz, Garrick, Dorian, He, Jun, Wang, Lixian

“…Genomic selection involves choosing as parents those elite individuals with the higher genomic estimated breeding values (GEBV) to accelerate the speed of…”
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An Expectation-Maximization Algorithm for Combining a Sample of Partially Overlapping Covariance Matrices by Akdemir, Deniz, Somo, Mohamed, Isidro-Sanchéz, Julio

“…The generation of unprecedented amounts of data brings new challenges in data management, but also an opportunity to accelerate the identification of processes…”
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Genetic Correlation, Genome-Wide Association and Genomic Prediction of Portable NIRS Predicted Carotenoids in Cassava Roots by Ikeogu, Ugochukwu N, Akdemir, Deniz, Wolfe, Marnin D, Okeke, Uche G, Chinedozi, Amaefula, Jannink, Jean-Luc, Egesi, Chiedozie N

“…Random forests (RF) was used to correlate spectral responses to known wet chemistry carotenoid concentrations including total carotenoid content (TCC),…”
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Correction: Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines by Spindel, Jennifer, Begum, Hasina, Akdemir, Deniz, Virk, Parminder, Collard, Bertrand, Redoña, Edilberto, Atlin, Gary, Jannink, Jean-Luc, McCouch, Susan R

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Leveraging trait and QTL covariates to improve genomic prediction of resistance to Fusarium head blight in Central European winter wheat by Morales, Laura, Akdemir, Deniz, Girard, Anne-Laure, Neumayer, Anton, Reddy Nannuru, Vinay Kumar, Shahinnia, Fahimeh, Stadlmeier, Melanie, Hartl, Lorenz, Holzapfel, Josef, Isidro-Sánchez, Julio, Kempf, Hubert, Lillemo, Morten, Löschenberger, Franziska, Michel, Sebastian, Buerstmayr, Hermann

“…Fusarium head blight (FHB) is a devastating disease of wheat, causing yield losses, reduced grain quality, and mycotoxin contamination. Breeding can mitigate…”
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Locally epistatic models for genome-wide prediction and association by importance sampling by Akdemir, Deniz, Jannink, Jean-Luc, Isidro-Sánchez, Julio

“…In statistical genetics, an important task involves building predictive models of the genotype-phenotype relationship to attribute a proportion of the total…”
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Regional Heritability Mapping Provides Insights into Dry Matter Content in African White and Yellow Cassava Populations by Okeke, Uche Godfrey, Akdemir, Deniz, Rabbi, Ismail, Kulakow, Peter, Jannink, Jean‐Luc

“…Core Ideas Regional heritability mapping (RHM) is effective for understanding the genetic architecture of complex traits in cassava. Prediction accuracies can…”
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Squamous cell and adenosquamous carcinomas of the gallbladder: clinicopathological analysis of 34 cases identified in 606 carcinomas by Roa, Juan C, Tapia, Oscar, Cakir, Asli, Basturk, Olca, Dursun, Nevra, Akdemir, Deniz, Saka, Burcu, Losada, Hector, Bagci, Pelin, Adsay, N Volkan

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