Search Results - "Ahrens, Christian"

Protter: interactive protein feature visualization and integration with experimental proteomic data by Omasits, Ulrich, Ahrens, Christian H, Müller, Sebastian, Wollscheid, Bernd

“…The ability to integrate and visualize experimental proteomic evidence in the context of rich protein feature annotations represents an unmet need of the…”
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Mercury (II) reduction and co-precipitation of metallic mercury on hydrous ferric oxide in contaminated groundwater by Richard, Jan-Helge, Bischoff, Cornelia, Ahrens, Christian G.M., Biester, Harald

“…Mercury (Hg) speciation and sorption analyses in contaminated aquifers are useful for understanding transformation, retention, and mobility of Hg in…”
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Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms by Turnbull, Lynne, Toyofuku, Masanori, Hynen, Amelia L., Kurosawa, Masaharu, Pessi, Gabriella, Petty, Nicola K., Osvath, Sarah R., Cárcamo-Oyarce, Gerardo, Gloag, Erin S., Shimoni, Raz, Omasits, Ulrich, Ito, Satoshi, Yap, Xinhui, Monahan, Leigh G., Cavaliere, Rosalia, Ahrens, Christian H., Charles, Ian G., Nomura, Nobuhiko, Eberl, Leo, Whitchurch, Cynthia B.

“…Many bacteria produce extracellular and surface-associated components such as membrane vesicles (MVs), extracellular DNA and moonlighting cytosolic proteins…”
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Towards the characterization of the hidden world of small proteins in Staphylococcus aureus, a proteogenomics approach by Fuchs, Stephan, Kucklick, Martin, Lehmann, Erik, Beckmann, Alexander, Wilkens, Maya, Kolte, Baban, Mustafayeva, Ayten, Ludwig, Tobias, Diwo, Maurice, Wissing, Josef, Jänsch, Lothar, Ahrens, Christian H, Ignatova, Zoya, Engelmann, Susanne

“…Small proteins play essential roles in bacterial physiology and virulence, however, automated algorithms for genome annotation are often not yet able to…”
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A Practical Guide to Small Protein Discovery and Characterization Using Mass Spectrometry by Ahrens, Christian H, Wade, Joseph T, Champion, Matthew M, Langer, Julian D

“…Small proteins of up to ∼50 amino acids are an abundant class of biomolecules across all domains of life. Yet due to the challenges inherent in their size,…”
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Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system by Somerville, Vincent, Lutz, Stefanie, Schmid, Michael, Frei, Daniel, Moser, Aline, Irmler, Stefan, Frey, Jürg E, Ahrens, Christian H

“…Complete and contiguous genome assemblies greatly improve the quality of subsequent systems-wide functional profiling studies and the ability to gain novel…”
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Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats by Schmid, Michael, Frei, Daniel, Patrignani, Andrea, Schlapbach, Ralph, Frey, Jürg E, Remus-Emsermann, Mitja N P, Ahrens, Christian H

“…Abstract Generating a complete, de novo genome assembly for prokaryotes is often considered a solved problem. However, we here show that Pseudomonas koreensis…”
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Generating and navigating proteome maps using mass spectrometry by Ahrens, Christian H, Aebersold, Ruedi, Brunner, Erich, Qeli, Ermir, Basler, Konrad

“…Key Points Complete proteome reference maps, which contain validated, mass spectrometry (MS)-derived, reference fragment ion spectra for unique peptides for…”
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Competition assays and physiological experiments of soil and phyllosphere yeasts identify Candida subhashii as a novel antagonist of filamentous fungi by Hilber-Bodmer, Maja, Schmid, Michael, Ahrens, Christian H, Freimoser, Florian M

“…While recent advances in next generation sequencing technologies have enabled researchers to readily identify countless microbial species in soil, rhizosphere,…”
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Volatile Organic Compounds from Native Potato-associated Pseudomonas as Potential Anti-oomycete Agents by De Vrieze, Mout, Pandey, Piyush, Bucheli, Thomas D, Varadarajan, Adithi R, Ahrens, Christian H, Weisskopf, Laure, Bailly, Aurélien

“…The plant kingdom represents a prominent biodiversity island for microbes that associate with the below- or aboveground organs of vegetal species. Both the…”
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A Peptidomimetic Antibiotic Targets Outer Membrane Proteins and Disrupts Selectively the Outer Membrane in Escherichia coli by Urfer, Matthias, Bogdanovic, Jasmina, Lo Monte, Fabio, Moehle, Kerstin, Zerbe, Katja, Omasits, Ulrich, Ahrens, Christian H., Pessi, Gabriella, Eberl, Leo, Robinson, John A.

“…Increasing antibacterial resistance presents a major challenge in antibiotic discovery. One attractive target in Gram-negative bacteria is the unique…”
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PeptideClassifier for protein inference and targeted quantitative proteomics by Ahrens, Christian H, Qeli, Ermir

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Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster by Goetze, Sandra, Qeli, Ermir, Mosimann, Christian, Staes, An, Gerrits, Bertran, Roschitzki, Bernd, Mohanty, Sonali, Niederer, Eva M, Laczko, Endre, Timmerman, Evy, Lange, Vinzenz, Hafen, Ernst, Aebersold, Ruedi, Vandekerckhove, Joël, Basler, Konrad, Ahrens, Christian H, Gevaert, Kris, Brunner, Erich

“…Protein modifications play a major role for most biological processes in living organisms. Amino-terminal acetylation of proteins is a common modification…”
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Seasonal Dynamics of Glyphosate and AMPA in Lake Greifensee: Rapid Microbial Degradation in the Epilimnion During Summer by Huntscha, Sebastian, Stravs, Michael A, Bühlmann, Andreas, Ahrens, Christian H, Frey, Jürg E, Pomati, Francesco, Hollender, Juliane, Buerge, Ignaz J, Balmer, Marianne E, Poiger, Thomas

“…Occurrence and fate of glyphosate, a widely used herbicide, and its main metabolite AMPA was investigated in Lake Greifensee, Switzerland. Monthly vertical…”
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Detection of Known and Novel Small Proteins in Pseudomonas stutzeri Using a Combination of Bottom-Up and Digest-Free Proteomics and Proteogenomics by Meier-Credo, Jakob, Heiniger, Benjamin, Schori, Christian, Rupprecht, Fiona, Michel, Hartmut, Ahrens, Christian H., Langer, Julian D.

“…Small proteins of around 50 aa in length have been largely overlooked in genetic and biochemical assays due to the inherent challenges with detecting and…”
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An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics by Omasits, Ulrich, Varadarajan, Adithi R, Schmid, Michael, Goetze, Sandra, Melidis, Damianos, Bourqui, Marc, Nikolayeva, Olga, Québatte, Maxime, Patrignani, Andrea, Dehio, Christoph, Frey, Juerg E, Robinson, Mark D, Wollscheid, Bernd, Ahrens, Christian H

“…Accurate annotation of all protein-coding sequences (CDSs) is an essential prerequisite to fully exploit the rapidly growing repertoire of completely sequenced…”
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Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes by Schrimpf, Sabine P, Weiss, Manuel, Reiter, Lukas, Ahrens, Christian H, Jovanovic, Marko, Malmström, Johan, Brunner, Erich, Mohanty, Sonali, Lercher, Martin J, Hunziker, Peter E, Aebersold, Ruedi, von Mering, Christian, Hengartner, Michael O

“…The nematode Caenorhabditis elegans is a popular model system in genetics, not least because a majority of human disease genes are conserved in C. elegans. To…”
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The AHL- and BDSF-dependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111 by Schmid, Nadine, Pessi, Gabriella, Deng, Yinyue, Aguilar, Claudio, Carlier, Aurelien L, Grunau, Alexander, Omasits, Ulrich, Zhang, Lian-Hui, Ahrens, Christian H, Eberl, Leo

“…Quorum sensing in Burkholderia cenocepacia H111 involves two signalling systems that depend on different signal molecules, namely N-acyl homoserine lactones…”
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Cis-2-dodecenoic acid receptor RpfR links quorum-sensing signal perception with regulation of virulence through cyclic dimeric guanosine monophosphate turnover by Deng, Yinyue, Schmid, Nadine, Wang, Chao, Wang, Jianhe, Pessi, Gabriella, Wu, Donghui, Lee, Jasmine, Aguilar, Claudio, Ahrens, Christian H., Chang, Changqing, Song, Haiwei, Eberl, Leo, Zhang, Lian-Hui

“…Many bacterial pathogens produce diffusible signal factor (DSF)-type quorum sensing (QS) signals in modulation of virulence and biofilm formation. Previous…”
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Bacterial tolerance to host-exuded specialized metabolites structures the maize root microbiome by Thoenen, Lisa, Giroud, Caitlin, Kreuzer, Marco, Waelchli, Jan, Gfeller, Valentin, Deslandes-Hérold, Gabriel, Mateo, Pierre, Robert, Christelle A M, Ahrens, Christian H, Rubio-Somoza, Ignacio, Bruggmann, Rémy, Erb, Matthias, Schlaeppi, Klaus

“…Plants exude specialized metabolites from their roots, and these compounds are known to structure the root microbiome. However, the underlying mechanisms are…”
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