Search Results - "Aguirrebengoa, Marion"
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Histone demethylase KDM5A regulates the ZMYND8-NuRD chromatin remodeler to promote DNA repair
Published in The Journal of cell biology (03-07-2017)“…Upon DNA damage, histone modifications are dynamically reshaped to accommodate DNA damage signaling and repair within chromatin. In this study, we report the…”
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Senataxin resolves RNA:DNA hybrids forming at DNA double-strand breaks to prevent translocations
Published in Nature communications (07-02-2018)“…Ataxia with oculomotor apraxia 2 (AOA-2) and amyotrophic lateral sclerosis (ALS4) are neurological disorders caused by mutations in the gene encoding for…”
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Comprehensive Mapping of Histone Modifications at DNA Double-Strand Breaks Deciphers Repair Pathway Chromatin Signatures
Published in Molecular cell (18-10-2018)“…Double-strand breaks (DSBs) are extremely detrimental DNA lesions that can lead to cancer-driving mutations and translocations. Non-homologous end joining…”
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Genome-wide mapping of long-range contacts unveils clustering of DNA double-strand breaks at damaged active genes
Published in Nature structural & molecular biology (01-04-2017)“…Capture Hi-C analysis reveals that DNA double-strand breaks within transcriptionally active regions of the human genome form clusters that exhibit delayed…”
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Integrated analysis of H2A.Z isoforms function reveals a complex interplay in gene regulation
Published in eLife (28-02-2020)“…The H2A.Z histone variant plays major roles in the control of gene expression. In human, H2A.Z is encoded by two genes expressing two isoforms, H2A.Z.1 and…”
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Control of Gene Expression in Senescence through Transcriptional Read-Through of Convergent Protein-Coding Genes
Published in Cell reports (Cambridge) (28-11-2017)“…Antisense RNAs are non-coding RNAs that can regulate their corresponding sense RNAs and are generally produced from specific promoters. We uncover here a…”
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p57Kip2 acts as a transcriptional corepressor to regulate intestinal stem cell fate and proliferation
Published in Cell reports (Cambridge) (27-06-2023)“…p57Kip2 is a cyclin/CDK inhibitor and a negative regulator of cell proliferation. Here, we report that p57 regulates intestinal stem cell (ISC) fate and…”
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Purification of astrocyte subtype based on a double reporter mice approach for downstream transcription profiling
Published in STAR protocols (17-12-2021)“…Characterizing the molecular signature of a cell subtype leads to a better understanding of cell diversity, as this molecular data can identify new cellular…”
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Non-redundant Functions of ATM and DNA-PKcs in Response to DNA Double-Strand Breaks
Published in Cell reports (Cambridge) (24-11-2015)“…DNA double-strand breaks (DSBs) elicit the so-called DNA damage response (DDR), largely relying on ataxia telangiectasia mutated (ATM) and DNA-dependent…”
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The histone demethylase JMJD2A/KDM4A links ribosomal RNA transcription to nutrients and growth factors availability
Published in Nature communications (05-01-2016)“…The interplay between methylation and demethylation of histone lysine residues is an essential component of gene expression regulation and there is…”
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Reassessment of the involvement of Snord115 in the serotonin 2c receptor pathway in a genetically relevant mouse model
Published in eLife (05-10-2020)“…has been proposed to promote the activity of serotonin (HTR2C) receptor via its ability to base pair with its pre-mRNA and regulate alternative RNA splicing…”
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12
Transcriptome profiling of the Olig2-expressing astrocyte subtype reveals their unique molecular signature
Published in iScience (23-07-2021)“…Astrocytes are recognized to be a heterogeneous population of cells that differ morphologically, functionally, and molecularly. Whether this heterogeneity…”
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Circular ANRIL isoforms switch from repressors to activators of p15/CDKN2B expression during RAF1 oncogene-induced senescence
Published in RNA biology (04-03-2021)“…Long non-coding RNAs (ncRNAs) are major regulators of gene expression and cell fate. The INK4 locus encodes the tumour suppressor proteins p15 INK4b , p16…”
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Morphogenesis is transcriptionally coupled to neurogenesis during peripheral olfactory organ development
Published in Development (Cambridge) (21-12-2020)“…Sense organs acquire their distinctive shapes concomitantly with the differentiation of sensory cells and neurons necessary for their function. Although our…”
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A vlincRNA participates in senescence maintenance by relieving H2AZ-mediated repression at the INK4 locus
Published in Nature communications (20-01-2015)“…Non-coding RNAs (ncRNAs) play major roles in proper chromatin organization and function. Senescence, a strong anti-proliferative process and a major anticancer…”
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16
A POLD3/BLM dependent pathway handles DSBs in transcribed chromatin upon excessive RNA:DNA hybrid accumulation
Published in Nature communications (19-04-2022)“…Transcriptionally active loci are particularly prone to breakage and mounting evidence suggests that DNA Double-Strand Breaks arising in active genes are…”
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17
p57 Kip2 acts as a transcriptional corepressor to regulate intestinal stem cell fate and proliferation
Published in Cell reports (Cambridge) (15-06-2023)“…p57 is a cyclin/CDK inhibitor and a negative regulator of cell proliferation. Here, we report that p57 regulates intestinal stem cell (ISC) fate and…”
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18
A dual role of dLsd1 in oogenesis: regulating developmental genes and repressing transposons
Published in Nucleic acids research (20-02-2020)“…Abstract The histone demethylase LSD1 is a key chromatin regulator that is often deregulated in cancer. Its ortholog, dLsd1 plays a crucial role in Drosophila…”
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Re-assessment of the involvement of Snord115 in the serotonin 2C receptor pathway in a genetically relevant mouse model
Published in eLife (02-10-2020)“…SNORD115 has been proposed to promote the activity of serotonin (HTR2C) receptor via its ability to base-pair with its pre-mRNA and regulate alternative RNA…”
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Journal Article -
20
Genome wide mapping of long range contacts unveils DNA Double Strand Breaks clustering at damaged active genes
Published in Nature structural & molecular biology (06-03-2017)“…The ability of DNA Double Strand Breaks (DSBs) to cluster in mammalian cells has been subjected to intense debate over the past few years. Here we used a high…”
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