Search Results - "Agari, Yoshihiro"

Structure and Activity of the RNA-Targeting Type III-B CRISPR-Cas Complex of Thermus thermophilus by Staals, Raymond H.J., Agari, Yoshihiro, Maki-Yonekura, Saori, Zhu, Yifan, Taylor, David W., van Duijn, Esther, Barendregt, Arjan, Vlot, Marnix, Koehorst, Jasper J., Sakamoto, Keiko, Masuda, Akiko, Dohmae, Naoshi, Schaap, Peter J., Doudna, Jennifer A., Heck, Albert J.R., Yonekura, Koji, van der Oost, John, Shinkai, Akeo

“…The CRISPR-Cas system is a prokaryotic host defense system against genetic elements. The Type III-B CRISPR-Cas system of the bacterium Thermus thermophilus,…”
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Structural and functional characterization of the transcriptional repressor CsoR from Thermus thermophilus HB8 by Sakamoto, Keiko, Agari, Yoshihiro, Agari, Kazuko, Kuramitsu, Seiki, Shinkai, Akeo

“…The TTHA1719 gene from Thermus thermophilus HB8 encodes an orthologue of the copper-sensing transcriptional repressor CsoR. X-ray crystal structure analysis of…”
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TetR-family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation by AGARI, Yoshihiro, AGARI, Kazuko, SAKAMOTO, Keiko, KURAMITSU, Seiki, SHINKAI, Akeo

“…In the extremely thermophilic bacterium Thermus thermophilus HB8, one of the four TetR-family transcriptional regulators, which we named T. thermophilus FadR,…”
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Structure and function of a TetR family transcriptional regulator, SbtR, from thermus thermophilus HB8 by Agari, Yoshihiro, Sakamoto, Keiko, Yutani, Katsuhide, Kuramitsu, Seiki, Shinkai, Akeo

“…SbtR is one of the four TetR family transcriptional regulators present in the extremely thermophilic bacterium, Thermus thermophilus HB8. We identified 10…”
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LdrP, a cAMP receptor protein/FNR family transcriptional regulator, serves as a positive regulator for the light-inducible gene cluster in the megaplasmid of Thermus thermophilus by Takano, Hideaki, Agari, Yoshihiro, Hagiwara, Kenta, Watanabe, Ren, Yamazaki, Ryuta, Beppu, Teruhiko, Shinkai, Akeo, Ueda, Kenji

“…LdrP (TT_P0055) (LitR-dependent regulatory protein) is one of the four cAMP receptor protein (CRP)/FNR family transcriptional regulators retained by the…”
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Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator by Agari, Yoshihiro, Kashihara, Aiko, Yokoyama, Shigeyuki, Kuramitsu, Seiki, Shinkai, Akeo

“…Thermus thermophilus SdrP is one of four cyclic AMP receptor protein (CRP)/fumarate and nitrate reduction regulator (FNR) family proteins from the extremely…”
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Inactivation of the DNA repair genes mutS, mutL or the anti-recombination gene mutS2 leads to activation of vitamin B1 biosynthesis genes by Fukui, Kenji, Wakamatsu, Taisuke, Agari, Yoshihiro, Masui, Ryoji, Kuramitsu, Seiki

“…Oxidative stress generates harmful reactive oxygen species (ROS) that attack biomolecules including DNA. In living cells, there are several mechanisms for…”
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Transcriptional Repression Mediated by a TetR Family Protein, PfmR, from Thermus thermophilus HB8 by Agari, Yoshihiro, Sakamoto, Keiko, Kuramitsu, Seiki, Shinkai, Akeo

“…PfmR is one of four TetR family transcriptional regulators found in the extremely thermophilic bacterium, Thermus thermophilus HB8. We identified three…”
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Identification of novel genes regulated by the oxidative stress‐responsive transcriptional activator SdrP in Thermus thermophilus HB8 by Agari, Yoshihiro, Kuramitsu, Seiki, Shinkai, Akeo

“…The stationary phase‐dependent regulatory protein (SdrP) from the extremely thermophilic bacterium, Thermus thermophilus HB8, a CRP/FNR family protein, is a…”
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Phenylacetyl Coenzyme A Is an Effector Molecule of the TetR Family Transcriptional Repressor PaaR from Thermus thermophilusHB8 by Sakamoto, Keiko, Agari, Yoshihiro, Kuramitsu, Seiki, Shinkai, Akeo

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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X-ray crystal structure of a CRISPR-associated RAMP superfamily protein, Cmr5, from Thermus thermophilus HB8 by Sakamoto, Keiko, Agari, Yoshihiro, Agari, Kazuko, Yokoyama, Shigeyuki, Kuramitsu, Seiki, Shinkai, Akeo

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Genome-wide comprehensive analysis of transcriptional regulation by ArgR in Thermus thermophilus by Iwanaga, Naoki, Ide, Kaori, Nagashima, Takeshi, Tomita, Takeo, Agari, Yoshihiro, Shinkai, Akeo, Kuramitsu, Seiki, Okada-Hatakeyema, Mariko, Kuzuyama, Tomohisa, Nishiyama, Makoto

“…ArgR is known to serve as a repressor/activator of the metabolism of arginine. To elucidate the role of ArgR in the metabolism of Thermus thermophilus cells,…”
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X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7 by Agari, Yoshihiro, Sato, Shinya, Wakamatsu, Taisuke, Bessho, Yoshitaka, Ebihara, Akio, Yokoyama, Shigeyuki, Kuramitsu, Seiki, Shinkai, Akeo

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Transcription Profile of Thermus thermophilus CRISPR Systems after Phage Infection by Agari, Yoshihiro, Sakamoto, Keiko, Tamakoshi, Masatada, Oshima, Tairo, Kuramitsu, Seiki, Shinkai, Akeo

“…The clustered regularly interspaced short palindromic repeat (CRISPR) systems composed of DNA direct repeats designated as CRISPRs and several…”
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X-ray crystal structure of TTHB099, a CRP/FNR superfamily transcriptional regulator from thermus thermophilus HB8, reveals a DNA-binding protein with no required allosteric effector molecule by Agari, Yoshihiro, Kuramitsu, Seiki, Shinkai, Akeo

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Phenylacetyl Coenzyme A Is an Effector Molecule of the TetR Family Transcriptional Repressor PaaR from Thermus thermophilus HB8 by SAKAMOTO, Keiko, AGARI, Yoshihiro, KURAMITSU, Seiki, SHINKAI, Akeo

“…Phenylacetic acid (PAA) is a common intermediate in the catabolic pathways of several structurally related aromatic compounds. It is converted into…”
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Structural and functional characterization of transcriptional repressor CsoR from Thermus thermophilus HB8 by Sakamoto, Keiko, Agari, Yoshihiro, Agari, Kazuko, Kuramitsu, Seiki, Shinkai, Akeo

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Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator by Agari, Yoshihiro, Kashihara, Aiko, Yokoyama, Shigeyuki, Kuramitsu, Seiki, Shinkai, Akeo

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Global gene expression mediated by Thermus thermophilusSdrP, a CRP/FNR family transcriptional regulator by Agari, Yoshihiro, Kashihara, Aiko, Yokoyama, Shigeyuki, Kuramitsu, Seiki, Shinkai, Akeo

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The role of ribonucleases in regulating global mRNA levels in the model organism Thermus thermophilus HB8 by Ohyama, Hiromasa, Sakai, Tomofumi, Agari, Yoshihiro, Fukui, Kenji, Nakagawa, Noriko, Shinkai, Akeo, Masui, Ryoji, Kuramitsu, Seiki

“…RNA metabolism, including RNA synthesis and RNA degradation, is one of the most conserved biological systems and has been intensively studied; however, the…”
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