Search Results - "Adriaenssens, Evelien M"

A Roadmap for Genome-Based Phage Taxonomy by Turner, Dann, Kropinski, Andrew M, Adriaenssens, Evelien M

“…Bacteriophage (phage) taxonomy has been in flux since its inception over four decades ago. Genome sequencing has put pressure on the classification system and…”
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Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks by Bin Jang, Ho, Bolduc, Benjamin, Zablocki, Olivier, Kuhn, Jens H., Roux, Simon, Adriaenssens, Evelien M., Brister, J. Rodney, Kropinski, Andrew M, Krupovic, Mart, Lavigne, Rob, Turner, Dann, Sullivan, Matthew B.

“…Microbiomes from every environment contain a myriad of uncultivated archaeal and bacterial viruses, but studying these viruses is hampered by the lack of a…”
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Viral indicators for tracking domestic wastewater contamination in the aquatic environment by Farkas, Kata, Walker, David I., Adriaenssens, Evelien M., McDonald, James E., Hillary, Luke S., Malham, Shelagh K., Jones, Davey L.

“…Waterborne enteric viruses are an emerging cause of disease outbreaks and represent a major threat to global public health. Enteric viruses may originate from…”
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Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021) by Walker, Peter J., Siddell, Stuart G., Lefkowitz, Elliot J., Mushegian, Arcady R., Adriaenssens, Evelien M., Alfenas-Zerbini, Poliane, Davison, Andrew J., Dempsey, Donald M., Dutilh, Bas E., García, María Laura, Harrach, Balázs, Harrison, Robert L., Hendrickson, R. Curtis, Junglen, Sandra, Knowles, Nick J., Krupovic, Mart, Kuhn, Jens H., Lambert, Amy J., Łobocka, Małgorzata, Nibert, Max L., Oksanen, Hanna M., Orton, Richard J., Robertson, David L., Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Smith, Donald B., Suzuki, Nobuhiro, Van Dooerslaer, Koenraad, Vandamme, Anne-Mieke, Varsani, Arvind, Zerbini, Francisco Murilo

“…This article reports the changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in March 2021. The entire…”
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Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee by Turner, Dann, Shkoporov, Andrey N., Lood, Cédric, Millard, Andrew D., Dutilh, Bas E., Alfenas-Zerbini, Poliane, van Zyl, Leonardo J., Aziz, Ramy K., Oksanen, Hanna M., Poranen, Minna M., Kropinski, Andrew M., Barylski, Jakub, Brister, J Rodney, Chanisvili, Nina, Edwards, Rob A., Enault, François, Gillis, Annika, Knezevic, Petar, Krupovic, Mart, Kurtböke, Ipek, Kushkina, Alla, Lavigne, Rob, Lehman, Susan, Lobocka, Malgorzata, Moraru, Cristina, Moreno Switt, Andrea, Morozova, Vera, Nakavuma, Jesca, Reyes Muñoz, Alejandro, Rūmnieks, Jānis, Sarkar, BL, Sullivan, Matthew B., Uchiyama, Jumpei, Wittmann, Johannes, Yigang, Tong, Adriaenssens, Evelien M.

“…This article summarises the activities of the Bacterial Viruses Subcommittee of the International Committee on Taxonomy of Viruses for the period of March…”
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Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022) by Walker, Peter J., Siddell, Stuart G., Lefkowitz, Elliot J., Mushegian, Arcady R., Adriaenssens, Evelien M., Alfenas-Zerbini, Poliane, Dempsey, Donald M., Dutilh, Bas E., García, María Laura, Curtis Hendrickson, R., Junglen, Sandra, Krupovic, Mart, Kuhn, Jens H., Lambert, Amy J., Łobocka, Małgorzata, Oksanen, Hanna M., Orton, Richard J., Robertson, David L., Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Smith, Donald B., Suzuki, Nobuhiro, Van Doorslaer, Koenraad, Vandamme, Anne-Mieke, Varsani, Arvind, Zerbini, Francisco Murilo

“…This article reports the changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in March 2022. The entire…”
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Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020) by Walker, Peter J., Siddell, Stuart G., Lefkowitz, Elliot J., Mushegian, Arcady R., Adriaenssens, Evelien M., Dempsey, Donald M., Dutilh, Bas E., Harrach, Balázs, Harrison, Robert L., Hendrickson, R. Curtis, Junglen, Sandra, Knowles, Nick J., Kropinski, Andrew M., Krupovic, Mart, Kuhn, Jens H., Nibert, Max, Orton, Richard J., Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Smith, Donald B., Varsani, Arvind, Zerbini, Francisco Murilo, Davison, Andrew J.

“…This article reports the changes to virus classification and taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in…”
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Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy by Aiewsakun, Pakorn, Adriaenssens, Evelien M, Lavigne, Rob, Kropinski, Andrew M, Simmonds, Peter

“…Genome Relationship Applied to Virus Taxonomy (GRAViTy) is a genetics-based tool that computes sequence relatedness between viruses. Composite generalized…”
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Phage Diversity in the Human Gut Microbiome: a Taxonomist's Perspective by Adriaenssens, Evelien M

“…Bacteriophages (phages) have been known for over a century, but only in the last 2 decades have we really come to appreciate how abundant and diverse they are…”
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Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation by Bawn, Matt, Alikhan, Nabil-Fareed, Thilliez, Gaëtan, Kirkwood, Mark, Wheeler, Nicole E, Petrovska, Liljana, Dallman, Timothy J, Adriaenssens, Evelien M, Hall, Neil, Kingsley, Robert A

“…Salmonella enterica serotype Typhimurium (S. Typhimurium) is a leading cause of gastroenteritis and bacteraemia worldwide, and a model organism for the study…”
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Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages by Barylski, Jakub, Enault, François, Dutilh, Bas E., Schuller, Margo B.P., Edwards, Robert A., Gillis, Annika, Klumpp, Jochen, Knezevic, Petar, Krupovic, Mart, Kuhn, Jens H., Lavigne, Rob, Oksanen, Hanna M., Sullivan, Matthew B., Jang, Ho Bin, Simmonds, Peter, Aiewsakun, Pakorn, Wittmann, Johannes, Tolstoy, Igor, Brister, J. Rodney, Kropinski, Andrew M., Adriaenssens, Evelien M.

“…Tailed bacteriophages are the most abundant and diverse viruses in the world, with genome sizes ranging from 10 kbp to over 500 kbp. Yet, due to historical…”
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T4-related bacteriophage LIMEstone isolates for the control of soft rot on potato caused by 'Dickeya solani' by Adriaenssens, Evelien M, Van Vaerenbergh, Johan, Vandenheuvel, Dieter, Dunon, Vincent, Ceyssens, Pieter-Jan, De Proft, Maurice, Kropinski, Andrew M, Noben, Jean-Paul, Maes, Martine, Lavigne, Rob

“…The bacterium 'Dickeya solani', an aggressive biovar 3 variant of Dickeya dianthicola, causes rotting and blackleg in potato. To control this pathogen using…”
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Tracing the fate of wastewater viruses reveals catchment-scale virome diversity and connectivity by Adriaenssens, Evelien M., Farkas, Kata, McDonald, James E., Jones, David L., Allison, Heather E., McCarthy, Alan J.

“…•Viromics enables viral source tracking of human viruses in the aquatic environment•Viromics shows geographically and niche-distinct viral communities•Viral…”
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Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture by Gilroy, Rachel, Ravi, Anuradha, Getino, Maria, Pursley, Isabella, Horton, Daniel L, Alikhan, Nabil-Fareed, Baker, Dave, Gharbi, Karim, Hall, Neil, Watson, Mick, Adriaenssens, Evelien M, Foster-Nyarko, Ebenezer, Jarju, Sheikh, Secka, Arss, Antonio, Martin, Oren, Aharon, Chaudhuri, Roy R, La Ragione, Roberto, Hildebrand, Falk, Pallen, Mark J

“…The chicken is the most abundant food animal in the world. However, despite its importance, the chicken gut microbiome remains largely undefined. Here, we…”
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Metagenomic analysis of the viral community in Namib Desert hypoliths by Adriaenssens, Evelien M., Van Zyl, Lonnie, De Maayer, Pieter, Rubagotti, Enrico, Rybicki, Ed, Tuffin, Marla, Cowan, Don A.

“…Summary Hypolithic microbial communities are specialized desert communities inhabiting the underside of translucent rocks. Here, we present the first study of…”
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Critical Evaluation of CrAssphage as a Molecular Marker for Human-Derived Wastewater Contamination in the Aquatic Environment by Farkas, Kata, Adriaenssens, Evelien M., Walker, David I., McDonald, James E., Malham, Shelagh K., Jones, Davey L.

“…The discharge of human-derived wastewater represents a major threat to water quality with the potential for waterborne disease outbreaks mainly associated with…”
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CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes by Baker, Dave J, Aydin, Alp, Le-Viet, Thanh, Kay, Gemma L, Rudder, Steven, de Oliveira Martins, Leonardo, Tedim, Ana P, Kolyva, Anastasia, Diaz, Maria, Alikhan, Nabil-Fareed, Meadows, Lizzie, Bell, Andrew, Gutierrez, Ana Victoria, Trotter, Alexander J, Thomson, Nicholas M, Gilroy, Rachel, Griffith, Luke, Adriaenssens, Evelien M, Stanley, Rachael, Charles, Ian G, Elumogo, Ngozi, Wain, John, Prakash, Reenesh, Meader, Emma, Mather, Alison E, Webber, Mark A, Dervisevic, Samir, Page, Andrew J, O'Grady, Justin

“…We present CoronaHiT, a platform and throughput flexible method for sequencing SARS-CoV-2 genomes (≤ 96 on MinION or > 96 on Illumina NextSeq) depending on…”
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Still Something to Discover: Novel Insights into Escherichia coli Phage Diversity and Taxonomy by Korf, Imke H E, Meier-Kolthoff, Jan P, Adriaenssens, Evelien M, Kropinski, Andrew M, Nimtz, Manfred, Rohde, Manfred, van Raaij, Mark J, Wittmann, Johannes

“…The aim of this study was to gain further insight into the diversity of Escherichia coli phagesfollowed by enhanced work on taxonomic issues in that field…”
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification by Adriaenssens, Evelien M., Roux, Simon, Brister, J. Rodney, Karsch-Mizrachi, Ilene, Kuhn, Jens H., Varsani, Arvind, Yigang, Tong, Reyes, Alejandro, Lood, Cédric, Lefkowitz, Elliot J., Sullivan, Matthew B., Edwards, Robert A., Simmonds, Peter, Rubino, Luisa, Sabanadzovic, Sead, Krupovic, Mart, Dutilh, Bas E.

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Environmental drivers of viral community composition in Antarctic soils identified by viromics by Adriaenssens, Evelien M, Kramer, Rolf, Van Goethem, Marc W, Makhalanyane, Thulani P, Hogg, Ian, Cowan, Don A

“…The Antarctic continent is considered the coldest and driest place on earth with simple ecosystems, devoid of higher plants. Soils in the ice-free regions of…”
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