Search Results - "Adames, Neil"

Yeast genetic interaction screens in the age of CRISPR/Cas by Adames, Neil R., Gallegos, Jenna E., Peccoud, Jean

“…The ease of performing both forward and reverse genetics in Saccharomyces cerevisiae , along with its stable haploid state and short generation times, has made…”
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Challenges and opportunities for strain verification by whole-genome sequencing by Gallegos, Jenna E., Hayrynen, Sergei, Adames, Neil R., Peccoud, Jean

“…Laboratory strains, cell lines, and other genetic materials change hands frequently in the life sciences. Despite evidence that such materials are subject to…”
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A stochastic model for error correction of kinetochore-microtubule attachments in budding yeast by Banerjee, Anand, Adames, Neil, Peccoud, Jean, Tyson, John J

“…To divide replicated chromosomes equally between daughter cells, kinetochores must attach to microtubules emanating from opposite poles of the mitotic spindle…”
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Hands-On Introduction to Synthetic Biology for Security Professionals by Adames, Neil R., Gallegos, Jenna E., Hunt, Sonia Y., So, William K., Peccoud, Jean

“…The rapid pace of life sciences innovations and a growing list of nontraditional actors engaging in biological research make it challenging to develop…”
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Adaptive imaging cytometry to estimate parameters of gene networks models in systems and synthetic biology by Ball, David A, Lux, Matthew W, Adames, Neil R, Peccoud, Jean

“…The use of microfluidics in live cell imaging allows the acquisition of dense time-series from individual cells that can be perturbed through…”
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GenoLIB: a database of biological parts derived from a library of common plasmid features by Adames, Neil R, Wilson, Mandy L, Fang, Gang, Lux, Matthew W, Glick, Benjamin S, Peccoud, Jean

“…Synthetic biologists rely on databases of biological parts to design genetic devices and systems. The sequences and descriptions of genetic parts are often…”
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Experimental testing of a new integrated model of the budding yeast Start transition by Adames, Neil R, Schuck, P Logan, Chen, Katherine C, Murali, T M, Tyson, John J, Peccoud, Jean

“…The cell cycle is composed of bistable molecular switches that govern the transitions between gap phases (G1 and G2) and the phases in which DNA is replicated…”
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Measurement and modeling of transcriptional noise in the cell cycle regulatory network by Ball, David, Adames, Neil, Reischmann, Nadine, Barik, Debashis, Franck, Christopher, Tyson, John J., Peccoud, Jean

“…Fifty years of genetic and molecular experiments have revealed a wealth of molecular interactions involved in the control of cell division. In light of the…”
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Recruitment of an Activated Gene to the Yeast Nuclear Pore Complex Requires Sumoylation by Saik, Natasha O, Park, Nogi, Ptak, Christopher, Adames, Neil, Aitchison, John D, Wozniak, Richard W

“…In addition to their role in regulating transport across the nuclear envelope, increasing evidence suggests nuclear pore complexes (NPCs) function in…”
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Microtubule interactions with the cell cortex causing nuclear movements in Saccharomyces cerevisiae by Adams, N.R, Cooper, J.A

“…During mitosis in budding yeast the nucleus first moves to the mother-bud neck and then into the neck. Both movements depend on interactions of cytoplasmic…”
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Genetic interactions derived from high-throughput phenotyping of 6589 yeast cell cycle mutants by Gallegos, Jenna E., Adames, Neil R., Rogers, Mark F., Kraikivski, Pavel, Ibele, Aubrey, Nurzynski-Loth, Kevin, Kudlow, Eric, Murali, T. M., Tyson, John J., Peccoud, Jean

“…Over the last 30 years, computational biologists have developed increasingly realistic mathematical models of the regulatory networks controlling the division…”
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Bni1p, a Yeast Formin Linking Cdc42p and the Actin Cytoskeleton During Polarized Morphogenesis by Evangelista, Marie, Blundell, Kelly, Longtine, Mark S., Chow, Clinton J., Adames, Neil, Pringle, John R., Peter, Matthias, Boone, Charles

“…The Saccharomyces cerevisiae BNI1 gene product (Bni1p) is a member of the formin family of proteins, which participate in cell polarization, cytokinesis, and…”
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The Surveillance Mechanism of the Spindle Position Checkpoint in Yeast by Adames, Neil R., Oberle, Jessica R., Cooper, John A.

“…The spindle position checkpoint in Saccharomyces cerevisiae delays mitotic exit until the spindle has moved into the mother-bud neck, ensuring that each…”
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Septins Have a Dual Role in Controlling Mitotic Exit in Budding Yeast by Castillon, Guillaume A., Adames, Neil R., Rosello, Caroline H., Seidel, Hannah S., Longtine, Mark S., Cooper, John A., Heil-Chapdelaine, Richard A.

“…In Saccharomyces cerevisiae, the spindle position checkpoint ensures that cells do not exit mitosis until the mitotic spindle moves into the mother/bud neck…”
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A cytokinesis checkpoint requiring the yeast homologue of an APC-binding protein by Cooper, John A, Muhua, Li, Adames, Neil R, Murphy, Michael D, Shields, Colleen R

“…Checkpoint controls ensure that events of the cell-division cycle are completed with fidelity and in the correct order. In budding yeast with a mutation in the…”
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Role of Yeast Insulin-Degrading Enzyme Homologs in Propheromone Processing and Bud Site Selection by Adames, Neil, Blundell, Kelly, Ashby, Matthew N., Boone, Charles

“…The Saccharomyces cerevisiae AXL1 gene product Axl1p shares homology with the insulin-degrading enzyme family of endoproteases. Yeast axl1 mutants showed a…”
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Formin' the Connection between Microtubules and the Cell Cortex by Heil-Chapdelaine, Richard A., Adames, Neil R., Cooper, John A.

“…New information about how microtubules interact with the cell cortex in yeast is considered…”
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CrossPlan: systematic planning of genetic crosses to validate mathematical models by Pratapa, Aditya, Adames, Neil, Kraikivski, Pavel, Franzese, Nicholas, Tyson, John J, Peccoud, Jean, Murali, T M

“…Abstract Motivation Mathematical models of cellular processes can systematically predict the phenotypes of novel combinations of multi-gene mutations…”
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GraphSpace: stimulating interdisciplinary collaborations in network biology by Bharadwaj, Aditya, Singh, Divit P, Ritz, Anna, Tegge, Allison N, Poirel, Christopher L, Kraikivski, Pavel, Adames, Neil, Luther, Kurt, Kale, Shiv D, Peccoud, Jean, Tyson, John J, Murali, T M

“…Networks have become ubiquitous in systems biology. Visualization is a crucial component in their analysis. However, collaborations within research teams in…”
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Experimental testing of a new integrated model of the budding yeast S tart transition by Adames, Neil R., Schuck, P. Logan, Chen, Katherine C., Murali, T. M., Tyson, John J., Peccoud, Jean

“…The cell cycle is composed of bistable molecular switches that govern the transitions between gap phases (G1 and G2) and the phases in which DNA is replicated…”
Get full text