Search Results - "Achal Neupane"

Long term crop rotation effect on subsequent soybean yield explained by soil and root-associated microbiomes and soil health indicators by Neupane, Achal, Bulbul, Izzet, Wang, Ziyi, Lehman, R. Michael, Nafziger, Emerson, Marzano, Shin-Yi Lee

“…Crop rotation is an important management tactic that farmers use to manage crop production and reduce pests and diseases. Long-term crop rotations may select…”
Get full text

Comparing Gut Microbiome in Mothers’ Own Breast Milk- and Formula-Fed Moderate-Late Preterm Infants by Wang, Ziyi, Neupane, Achal, Vo, Richard, White, Jessica, Wang, Xiuqing, Marzano, Shin-Yi Lee

“…Gut microbiome plays an important role in adult human health and diseases. However, how nutritional factors shape the initial colonization of gut bacteria in…”
Get full text

Transcriptional and Small RNA Responses of the White Mold Fungus Sclerotinia sclerotiorum to Infection by a Virulence-Attenuating Hypovirus by Lee Marzano, Shin-Yi, Neupane, Achal, Domier, Leslie

“…Mycoviruses belonging to the family cause persistent infection of many different host fungi. We previously determined that the white mold fungus, , infected…”
Get full text

Roles of Argonautes and Dicers on Sclerotinia sclerotiorum Antiviral RNA Silencing by Neupane, Achal, Feng, Chenchen, Mochama, Pauline K, Saleem, Huma, Lee Marzano, Shin-Yi

“…RNA silencing or RNA interference (RNAi) is an essential mechanism in animals, fungi, and plants that functions in gene regulation and defense against foreign…”
Get full text

Mycoviruses as Triggers and Targets of RNA Silencing in White Mold Fungus Sclerotinia sclerotiorum by Mochama, Pauline, Jadhav, Prajakta, Neupane, Achal, Lee Marzano, Shin-Yi

“…This study aimed to demonstrate the existence of antiviral RNA silencing mechanisms in by infecting wild-type and RNA-silencing-deficient strains of the fungus…”
Get full text

Direct Metatranscriptomic Survey of the Sunflower Microbiome and Virome by Wang, Ziyi, Neupane, Achal, Feng, Jiuhuan, Pedersen, Connor, Lee Marzano, Shin-Yi

“…Sunflowers ( L.) are susceptible to multiple diseases in field production. In this study, we collected diseased sunflower leaves in fields located in South…”
Get full text

Metatranscriptomic Analysis and In Silico Approach Identified Mycoviruses in the Arbuscular Mycorrhizal Fungus Rhizophagus spp by Neupane, Achal, Feng, Chenchen, Feng, Jiuhuan, Kafle, Arjun, Bücking, Heike, Lee Marzano, Shin-Yi

“…Arbuscular mycorrhizal fungi (AMF), including spp., can play important roles in nutrient cycling of the rhizosphere. However, the effect of virus infection on…”
Get full text

Can Phytoremediation-Induced Changes in the Microbiome Improve Saline/Sodic Soil and Plant Health? by Neupane, Achal, Jakubowski, Duncan, Fiedler, Douglas, Gu, Liping, Clay, Sharon A., Clay, David E., Lee Marzano, Shin-Yi

“…Increasing soil salinity and/or sodicity is an expanding problem in the Northern Great Plains (NGP) of North America. This study investigated the impact of…”
Get full text

Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower ( Helianthus annuus L.) by Neupane, Surendra, Schweitzer, Sarah E, Neupane, Achal, Andersen, Ethan J, Fennell, Anne, Zhou, Ruanbao, Nepal, Madhav P

“…Mitogen-Activated Protein Kinase (MAPK) genes encode proteins that regulate biotic and abiotic stresses in plants through signaling cascades comprised of three…”
Get full text

Identification, Nomenclature, and Evolutionary Relationships of Mitogen-Activated Protein Kinase (MAPK) Genes in Soybean by Neupane, Achal, Nepal, Madhav P., Piya, Sarbottam, Subramanian, Senthil, Rohila, Jai S., Reese, R. Neil, Benson, Benjamin V.

“…Mitogen-activated protein kinase (MAPK) genes in eukaryotes regulate various developmental and physiological processes including those associated with biotic…”
Get full text

Genome-Wide Identification of NBS-Encoding Resistance Genes in Sunflower (Helianthus annuus L.) by Neupane, Surendra, Andersen, Ethan J, Neupane, Achal, Nepal, Madhav P

“…Nucleotide Binding Site-Leucine-Rich Repeat (NBS-LRR) genes encode disease resistance proteins involved in plants' defense against their pathogens. Although…”
Get full text

Small RNAs: Big Roles in White Mold Infecting Crop Plants by Neupane, Achal

“…In eukaryotes, small RNAs (sRNAs) are key regulators of RNA silencing which is also known as RNA interference (RNAi). RNAi is an essential mechanism known in…”
Get full text

Genetic study of type 2 diabetes risk in diverse populations of survivors of childhood cancer: A report from the St. Jude Lifetime Cohort (SJLIFE) and the Childhood Cancer Survivor Study (CCSS) by Im, Cindy, Neupane, Achal, Baedke, Jessica L, Delaney, Angela, Dixon, Stephanie B, Chow, Eric Jessen, Richard, Melissa A., Gramatges, Maria Monica, Lupo, Philip, Sharafeldin, Noha, Bhatia, Smita, Armstrong, Gregory T., Hudson, Melissa M., Ness, Kirsten K., Robison, Leslie L., Yasui, Yutaka, Wilson, Carmen L, Sapkota, Yadav

“…10029 Background: Type 2 diabetes (T2D) is an established late effect of cancer treatment among long-term survivors of childhood cancer. Genetic factors…”
Get full text

Replication study of AD‐associated rare variants by Neupane, Achal, Lenny, Brian, Budde, John P., Wang, Fengxian, Norton, Joanne, Morris, John C., Cruchaga, Carlos, Fernández, Maria Victoria

Get full text

Trans-Ancestral Genetic Risk Factors for Treatment-Related Type 2 Diabetes Mellitus in Survivors of Childhood Cancer by Im, Cindy, Neupane, Achal, Baedke, Jessica L, Lenny, Brian, Delaney, Angela, Dixon, Stephanie B, Chow, Eric J, Mostoufi-Moab, Sogol, Yang, Tianzhong, Richard, Melissa A, Gramatges, M Monica, Lupo, Philip J, Sharafeldin, Noha, Bhatia, Smita, Armstrong, Gregory T, Hudson, Melissa M, Ness, Kirsten K, Robison, Leslie L, Yasui, Yutaka, Wilson, Carmen L, Sapkota, Yadav

“…Type 2 diabetes mellitus (T2D) is a prevalent long-term complication of treatment in survivors of childhood cancer, with marked racial/ethnic differences in…”
Get full text

A large‐scale genome‐wide association study of early‐onset Alzheimer disease by Neupane, Achal, da Fonseca, Eder Lucio, Kurup, Jiji Thulaseedhara, Pericak‐Vance, Margaret A., Martin, Eden R., Schellenberg, Gerard D., Reitz, Christiane, Beecham, Gary W., Cruchaga, Carlos, Fernandez, Victoria

“…Background Early‐onset (≤65 years old) Alzheimer Disease (EOAD), which accounts for approximately 10% of all AD cases, is sometimes equated with dominantly…”
Get full text

Identification of genetic modifiers for Alzheimer disease: The Familial Alzheimer Sequencing (FASe) project by Neupane, Achal, Budde, John P., Bergmann, Kristy, Norton, Joanne, Gentsch, Jen, Wang, Fengxian, Del‐Aguila, Jorge L., Ibanez, Laura, Morris, John C., Goate, Alison M., Renton, Alan E., Fernandez, Victoria, Cruchaga, Carlos

“…Background The Familial Alzheimer Sequencing (FASe) project aims to identify rare and high penetrant variants that have strong effect in the etiology of…”
Get full text

Functional Validation of Doxorubicin-Induced Cardiotoxicity-Related Genes by Fonoudi, Hananeh, Jouni, Mariam, Cejas, Romina B., Magdy, Tarek, Blancard, Malorie, Ge, Ning, Shah, Disheet A., Lyra-Leite, Davi M., Neupane, Achal, Gharib, Mennat, Jiang, Zhengxin, Sapkota, Yadav, Burridge, Paul W.

“…Genome-wide association studies and candidate gene association studies have identified more than 180 genetic variants statistically associated with…”
Get full text

Abstract 6382: Risk prediction of dyslipidemia in long-term survivors of childhood cancer: A report from the St. Jude Lifetime Cohort by Petrykey, Kateryna, Li, Kendrick, Xie, Lu, Neupane, Achal, Delaney, Angela, Yu, Christine, Dixon, Stephanie B., Ky, Bonnie, Im, Cindy, Rhea, Isaac B., Towbin, Jeffrey A., Johnson, Jason N., Bolier, Melissa, Pluimakers, Vincent G., Broer, Linda, Neggers, Sebastian J., Heuvel-Eibrink, Marry M. van den, Howell, Rebecca M., Ness, Kirsten K., Hudson, Melissa M., Armstrong, Gregory T., Yasui, Yutaka, Sapkota, Yadav

“…Abstract Background: Dyslipidemia is a significant contributor to the increased risk of cardiovascular morbidity and premature mortality in long-term survivors…”
Get full text

Genetic diversity and population structure of sickleweed (Falcaria vulgaris; Apiaceae) in the upper Midwest USA by Piya, Sarbottam, Nepal, Madhav P, Butler, Jack L, Larson, Gary E, Neupane, Achal

“…Sickleweed (Falcaria vulgaris), an introduced species native to Europe and Asia, grows as an aggressive weed in some areas of the upper Midwest in the United…”
Get full text