Search Results - "Abrishami, V"

Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy by de la Rosa-Trevín, J.M., Quintana, A., del Cano, L., Zaldívar, A., Foche, I., Gutiérrez, J., Gómez-Blanco, J., Burguet-Castell, J., Cuenca-Alba, J., Abrishami, V., Vargas, J., Otón, J., Sharov, G., Vilas, J.L., Navas, J., Conesa, P., Kazemi, M., Marabini, R., Sorzano, C.O.S., Carazo, J.M.

“…In the past few years, 3D electron microscopy (3DEM) has undergone a revolution in instrumentation and methodology. One of the central players in this…”
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A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs by Abrishami, V, Zaldívar-Peraza, A, de la Rosa-Trevín, J M, Vargas, J, Otón, J, Marabini, R, Shkolnisky, Y, Carazo, J M, Sorzano, C O S

“…Structural information of macromolecular complexes provides key insights into the way they carry out their biological functions. Achieving high-resolution…”
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ENRICH: A fast method to improve the quality of flexible macromolecular reconstructions by Kazemi, M., Sorzano, C.O.S., Carazo, J.M., Georges, A. des, Abrishami, V., Vargas, J.

“…Cryo-electron microscopy using single particle analysis requires the computational averaging of thousands of projection images captured from identical…”
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A statistical approach to the initial volume problem in Single Particle Analysis by Electron Microscopy by Sorzano, C.O.S., Vargas, J., de la Rosa-Trevín, J.M., Otón, J., Álvarez-Cabrera, A.L., Abrishami, V., Sesmero, E., Marabini, R., Carazo, J.M.

“…Cryo Electron Microscopy is a powerful Structural Biology technique, allowing the elucidation of the three-dimensional structure of biological macromolecules…”
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A review of resolution measures and related aspects in 3D Electron Microscopy by Sorzano, C.O.S., Vargas, J., Otón, J., Abrishami, V., de la Rosa-Trevín, J.M., Gómez-Blanco, J., Vilas, J.L., Marabini, R., Carazo, J.M.

“…Fourier Shell Correlation, Spectral Signal-to-Noise Ratio, Fourier Neighbour Correlation, and Differential Phase Residual are different measures that have been…”
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A fast iterative convolution weighting approach for gridding-based direct Fourier three-dimensional reconstruction with correction for the contrast transfer function by Abrishami, V., Bilbao-Castro, J.R., Vargas, J., Marabini, R., Carazo, J.M., Sorzano, C.O.S.

“…We describe a fast and accurate method for the reconstruction of macromolecular complexes from a set of projections. Direct Fourier inversion (in which the…”
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Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques by Vargas, J, Abrishami, V, Marabini, R, de la Rosa-Trevín, J M, Zaldivar, A, Carazo, J M, Sorzano, C O S

“…Three-dimensional reconstruction of biological specimens using electron microscopy by single particle methodologies requires the identification and extraction…”
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Cryo-EM and the elucidation of new macromolecular structures: Random Conical Tilt revisited by Sorzano, C. O. S., Alcorlo, M., de la Rosa-Trevín, J. M., Melero, R., Foche, I., Zaldívar-Peraza, A., del Cano, L., Vargas, J., Abrishami, V., Otón, J., Marabini, R., Carazo, J. M.

“…Cryo-Electron Microscopy (cryo-EM) of macromolecular complexes is a fundamental structural biology technique which is expanding at a very fast pace. Key to its…”
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Local analysis of strains and rotations for macromolecular electron microscopy maps by Sorzano, C.O.S., Martín-Ramos, A., Prieto, F., Melero, R., Martín-Benito, J., Jonic, S., Navas-Calvente, J., Vargas, J., Otón, J., Abrishami, V., de la Rosa-Trevín, J.M., Gómez-Blanco, J., Vilas, J.L., Marabini, R., Carazo, J.M.

“…Macromolecular complexes perform their physiological functions by local rearrangements of their constituents and biochemically interacting with their reaction…”
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Convergent total synthesis of (+)-calcipotriol: A scalable, modular approach to vitamin D analogs by Gu, Jieyu, Rodriguez, Kevin X, Kanda, Yuzuru, Yang, Shenghua, Ociepa, Michal, Wilke, Henrik, Abrishami, Arteen V, Jørgensen, Lars, Skak-Nielsen, Tine, Chen, Jason S, Baran, Phil S

“…A convergent approach for the total synthesis of calcipotriol (brand name: Dovonex), a proven vitamin D analog used for the treatment of psoriasis, and…”
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An image processing approach to the simulation of electron microscopy volumes of atomic structures by Sorzano, C. O. S., Vargas, J., Oton, J., Abrishami, V., de la Rosa-Trevin, J. M., del Riego, S., Fernandez-Alderete, A., Martinez-Rey, C., Marabini, R., Carazo, J. M.

“…The goal of this paper is to construct accurate three-dimensional models from atomic structures that can be compared to Electron Microscopy volumes. They, in…”
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Real-time pedestrian detecting and tracking in crowded and complicated scenario by Abrishami, V, Rezaee, A, Baherzadeh, H, Abrishami, H

“…Detecting and tracking people in real time in complicated and crowded scenes is a challenging problem. This paper presents a multi-cue methodology to detect…”
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