Search Results - "Abascal, F"

ProtTest: selection of best-fit models of protein evolution by Abascal, Federico, Zardoya, Rafael, Posada, David

“…Using an appropriate model of amino acid replacement is very important for the study of protein evolution and phylogenetic inference. We have built a tool for…”
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Molecular mechanism for cavitation in water under tension by Menzl, Georg, Gonzalez, Miguel A., Geiger, Philipp, Caupin, Frédéric, Abascal, José L. F., Valeriani, Chantal, Dellago, Christoph

“…Despite its relevance in biology and engineering, the molecular mechanism driving cavitation in water remains unknown. Using computer simulations, we…”
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Homogeneous Ice Nucleation at Moderate Supercooling from Molecular Simulation by Sanz, E, Vega, C, Espinosa, J. R, Caballero-Bernal, R, Abascal, J. L. F, Valeriani, C

“…Among all of the freezing transitions, that of water into ice is probably the most relevant to biology, physics, geology, or atmospheric science. In this work,…”
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A general purpose model for the condensed phases of water: TIP4P/2005 by Abascal, J L F, Vega, C

“…A potential model intended to be a general purpose model for the condensed phases of water is presented. TIP4P/2005 is a rigid four site model which consists…”
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Anomalies in bulk supercooled water at negative pressure by Pallares, Gaël, El Mekki Azouzi, Mouna, González, Miguel A., Aragones, Juan L., Abascal, José L. F., Valeriani, Chantal, Caupin, Frédéric

“…Water anomalies still defy explanation. In the supercooled liquid, many quantities, for example heat capacity and isothermal compressibility [Formula], show a…”
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What ice can teach us about water interactions: a critical comparison of the performance of different water models by Vega, C, Abascal, J L F, Conde, M M, Aragones, J L

“…The performance of several popular water models (TIP3P, TIP4P, TIP5P and TIP4P/2005) is analyzed. For that purpose the predictions for ten different properties…”
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Electrical Resistance Tomography for Visualization of Moving Objects Using a Spatiotemporal Total Variation Regularization Algorithm by Chen, Bo, Abascal, Juan F P J, Soleimani, Manuchehr

“…Electrical resistance tomography (ERT) has been considered as a data collection and image reconstruction method in many multi-phase flow application areas due…”
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Atlantic bluefin tuna spawn at suboptimal temperatures for their offspring by Reglero, P., Ortega, A., Balbín, R., Abascal, F. J., Medina, A., Blanco, E., de la Gándara, F., Alvarez-Berastegui, D., Hidalgo, M., Rasmuson, L., Alemany, F., Fiksen, Ø.

“…Life-history traits such as spawning migrations and timing of reproduction are adaptations to specific environmental constraints and seasonal cycles in many…”
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Beneficial Effects of Mifepristone Treatment in Patients with Breast Cancer Selected by the Progesterone Receptor Isoform Ratio: Results from the MIPRA Trial by Elía, Andrés, Saldain, Leo, Vanzulli, Silvia I, Helguero, Luisa A, Lamb, Caroline A, Fabris, Victoria, Pataccini, Gabriela, Martínez-Vazquez, Paula, Burruchaga, Javier, Caillet-Bois, Ines, Spengler, Eunice, Acosta Haab, Gabriela, Liguori, Marcos, Castets, Alejandra, Lovisi, Silvia, Abascal, María F, Novaro, Virginia, Sánchez, Jana, Muñoz, Javier, Belizán, José M, Abba, Martín C, Gass, Hugo, Rojas, Paola, Lanari, Claudia

“…Preclinical data suggest that antiprogestins inhibit the growth of luminal breast carcinomas that express higher levels of progesterone receptor isoform A…”
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MtArt: A New Model of Amino Acid Replacement for Arthropoda by Abascal, Federico, Posada, David, Zardoya, Rafael

“…A statistical approach was applied to select those models that best fit each individual mitochondrial (mt) protein at different taxonomic levels of metazoans…”
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Extended Joint Sparsity Reconstruction for Spatial and Temporal ERT Imaging by Chen, Bo, Abascal, Juan F P J, Soleimani, Manuchehr

“…Electrical resistance tomography (ERT) is an imaging technique to recover the conductivity distribution with boundary measurements via attached electrodes…”
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Material Decomposition in Spectral CT Using Deep Learning: A Sim2Real Transfer Approach by Abascal, Juan F. P. J., Ducros, Nicolas, Pronina, Valeriya, Rit, Simon, Rodesch, Pierre-Antoine, Broussaud, Thomas, Bussod, Suzanne, Douek, Philippe C., Hauptmann, Andreas, Arridge, Simon, Peyrin, Francoise

“…The state-of-the art for solving the nonlinear material decomposition problem in spectral computed tomography is based on variational methods, but these are…”
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Fluorescence diffuse optical tomography using the split Bregman method by Abascal, J. F. P.-J., Chamorro-Servent, J., Aguirre, J, Arridge, S., Correia, T., Ripoll, J., Vaquero, J. J., Desco, M.

“…Purpose: Standard image reconstruction methods for fluorescence Diffuse Optical Tomography (fDOT) generally make use of L2-regularization. A better choice is…”
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Phase diagram of water from computer simulation by SANZ, E, VEGA, C, ABASCAL, J. L. F, MACDOWELL, L. G

“…The phase diagram of water as obtained from computer simulations is presented for the first time for two of the most popular models of water, TIP4P and SPC/E…”
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A Novel Prior- and Motion-Based Compressed Sensing Method for Small-Animal Respiratory Gated CT by Abascal, Juan F P J, Abella, Monica, Marinetto, Eugenio, Pascau, Javier, Desco, Manuel

“…Low-dose protocols for respiratory gating in cardiothoracic small-animal imaging lead to streak artifacts in the images reconstructed with a…”
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Incorporation of Prior Knowledge of Signal Behavior Into the Reconstruction to Accelerate the Acquisition of Diffusion MRI Data by Abascal, Juan F. P. J., Desco, Manuel, Parra-Robles, Juan

“…Diffusion MRI data are generally acquired using hyperpolarized gases during patient breath-hold, which yields a compromise between achievable image resolution,…”
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Characterization of sperm motility in sea bass: the effect of heavy metals and physicochemical variables on sperm motility by Abascal, F. J., Cosson, J., Fauvel, C.

“…Computer assisted sperm analysis (CASA) was used to characterize the motility of sea bass Dicentrarchus labrax spermatozoa and to study the effect of several…”
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Use of Split Bregman denoising for iterative reconstruction in fluorescence diffuse optical tomography by Chamorro-Servent, Judit, Abascal, Juan F. P. J, Aguirre, Juan, Arridge, Simon, Correia, Teresa, Ripoll, Jorge, Desco, Manuel, Vaquero, Juan J

“…Fluorescence diffuse optical tomography (fDOT) is a noninvasive imaging technique that makes it possible to quantify the spatial distribution of fluorescent…”
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Tracking of the broadbill swordfish, Xiphias gladius, in the central and eastern North Atlantic by Abascal, F.J., Mejuto, J., Quintans, M., García-Cortés, B., Ramos-Cartelle, A.

“…A total of 21 swordfish, Xiphias gladius, were tagged with pop-up satellite tags in northern and southeastern areas of the North Atlantic Ocean. There were…”
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Randomized clinical trial of Plantago ovata seeds (dietary fiber) as compared with mesalamine in maintaining remission in ulcerative colitis by Fernández-Bañares, F, Hinojosa, J, Sánchez-Lombraña, J.L, Navarro, E, Martı́nez-Salmerón, J.F, Garcı́a-Pugés, A, González-Huix, F, Riera, J, González-Lara, V, Domı́nguez-Abascal, F, Giné, J.J, Moles, J, Gomollón, F, Gassull, M.A

“…Objective: Butyrate enemas may be effective in the treatment of active distal ulcerative colitis. Because colonic fermentation of Plantago ovata seeds (dietary…”
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