Search Results - "ANSELMI, Francesca"

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    Intragenic DNA methylation prevents spurious transcription initiation by Neri, Francesco, Rapelli, Stefania, Krepelova, Anna, Incarnato, Danny, Parlato, Caterina, Basile, Giulia, Maldotti, Mara, Anselmi, Francesca, Oliviero, Salvatore

    Published in Nature (London) (02-03-2017)
    “…In mammals, DNA methylation occurs mainly at CpG dinucleotides. Methylation of the promoter suppresses gene expression, but the functional role of gene-body…”
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    Genome-wide profiling of mouse RNA secondary structures reveals key features of the mammalian transcriptome by Incarnato, Danny, Neri, Francesco, Anselmi, Francesca, Oliviero, Salvatore

    Published in Genome biology (01-01-2014)
    “…The understanding of RNA structure is a key feature toward the comprehension of RNA functions and mechanisms of action. In particular, non-coding RNAs are…”
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    Genome-scale deconvolution of RNA structure ensembles by Morandi, Edoardo, Manfredonia, Ilaria, Simon, Lisa M., Anselmi, Francesca, van Hemert, Martijn J., Oliviero, Salvatore, Incarnato, Danny

    Published in Nature methods (01-03-2021)
    “…RNA structure heterogeneity is a major challenge when querying RNA structures with chemical probing. We introduce DRACO, an algorithm for the deconvolution of…”
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    High-throughput single-base resolution mapping of RNA 2΄-O-methylated residues by Incarnato, Danny, Anselmi, Francesca, Morandi, Edoardo, Neri, Francesco, Maldotti, Mara, Rapelli, Stefania, Parlato, Caterina, Basile, Giulia, Oliviero, Salvatore

    Published in Nucleic acids research (17-02-2017)
    “…Functional characterization of the transcriptome requires tools for the systematic investigation of RNA post-transcriptional modifications. 2΄-O-methylation…”
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    Scanless two-photon excitation of channelrhodopsin-2 by Emiliani, Valentina, Papagiakoumou, Eirini, Anselmi, Francesca, Isacoff, Ehud Y, de Sars, Vincent, Bègue, Aurélien, Glückstad, Jesper

    Published in Nature methods (01-10-2010)
    “…Generalized phase contrast and temporal focusing are combined to shape two-photon excitation patterns that elicit large photocurrents in ChR2-expressing…”
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    Three-dimensional imaging and photostimulation by remote-focusing and holographic light patterning by Anselmi, Francesca, Ventalon, Cathie, Bègue, Aurélien, Ogden, David, Emiliani, Valentina

    “…Access to three-dimensional structures in the brain is fundamental to probe signal processing at multiple levels, from integration of synaptic inputs to…”
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    An Interglomerular Circuit Gates Glomerular Output and Implements Gain Control in the Mouse Olfactory Bulb by Banerjee, Arkarup, Marbach, Fred, Anselmi, Francesca, Koh, Matthew S., Davis, Martin B., Garcia da Silva, Pedro, Delevich, Kristen, Oyibo, Hassana K., Gupta, Priyanka, Li, Bo, Albeanu, Dinu F.

    Published in Neuron (Cambridge, Mass.) (01-07-2015)
    “…Odors elicit distributed activation of glomeruli in the olfactory bulb (OB). Crosstalk between co-active glomeruli has been proposed to perform a variety of…”
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    Single-Base Resolution Analysis of 5-Formyl and 5-Carboxyl Cytosine Reveals Promoter DNA Methylation Dynamics by Neri, Francesco, Incarnato, Danny, Krepelova, Anna, Rapelli, Stefania, Anselmi, Francesca, Parlato, Caterina, Medana, Claudio, Dal Bello, Federica, Oliviero, Salvatore

    Published in Cell reports (Cambridge) (10-02-2015)
    “…Ten eleven translocation (Tet) proteins oxidize 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC), and 5-carboxylcytosine…”
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    TET1 is controlled by pluripotency-associated factors in ESCs and downmodulated by PRC2 in differentiated cells and tissues by Neri, Francesco, Incarnato, Danny, Krepelova, Anna, Dettori, Daniela, Rapelli, Stefania, Maldotti, Mara, Parlato, Caterina, Anselmi, Francesca, Galvagni, Federico, Oliviero, Salvatore

    Published in Nucleic acids research (18-08-2015)
    “…Ten-eleven translocation (Tet) genes encode for a family of hydroxymethylase enzymes involved in regulating DNA methylation dynamics. Tet1 is highly expressed…”
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    Genome-Wide Analysis of Smad7-Mediated Transcription in Mouse Embryonic Stem Cells by Meng, Guohua, Lauria, Andrea, Maldotti, Mara, Anselmi, Francesca, Polignano, Isabelle Laurence, Rapelli, Stefania, Donna, Daniela, Oliviero, Salvatore

    “…Smad7 has been identified as a negative regulator of the transforming growth factor TGF-β pathway by direct interaction with the TGF-β type I receptor (TβR-I)…”
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  14. 14

    HaTSPiL: A modular pipeline for high-throughput sequencing data analysis by Morandi, Edoardo, Cereda, Matteo, Incarnato, Danny, Parlato, Caterina, Basile, Giulia, Anselmi, Francesca, Lauria, Andrea, Simon, Lisa Marie, Laurence Polignano, Isabelle, Arruga, Francesca, Deaglio, Silvia, Tirtei, Elisa, Fagioli, Franca, Oliviero, Salvatore

    Published in PloS one (15-10-2019)
    “…Next generation sequencing methods are widely adopted for a large amount of scientific purposes, from pure research to health-related studies. The decreasing…”
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    Involvement of N4BP2L1 , PLEKHA4 , and BEGAIN genes in breast cancer and muscle cell development by Dastsooz, Hassan, Anselmi, Francesca, Lauria, Andrea, Cicconetti, Chiara, Proserpio, Valentina, Mohammadisoleimani, Elham, Firoozi, Zahra, Mansoori, Yaser, Haghi-Aminjan, Hamed, Caizzi, Livia, Oliviero, Salvatore

    “…Patients with breast cancer show altered expression of genes within the pectoralis major skeletal muscle cells of the breast. Through analyses of The Cancer…”
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    Growth Factor Stimulation Induces Cell Survival by c-Jun·ATF2-dependent Activation of Bcl-XL by Salameh, Ahmad, Galvagni, Federico, Anselmi, Francesca, De Clemente, Caterina, Orlandini, Maurizio, Oliviero, Salvatore

    Published in The Journal of biological chemistry (23-07-2010)
    “…Growth factor stimulation induces c-Jun-dependent survival of primary endothelial cells. However, the mechanism of c-Jun anti-apoptotic activity has not been…”
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    Atrial Enlargement in the Athlete's Heart: Assessment of Atrial Function May Help Distinguish Adaptive from Pathologic Remodeling by D'Ascenzi, Flavio, Anselmi, Francesca, Focardi, Marta, Mondillo, Sergio

    “…Intensive training is associated with hemodynamic changes that typically induce an enlargement of cardiac chambers, involving not only the ventricles but also…”
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