Search Results - "ALLARD, Marc"

Nanopore sequencing for fast determination of plasmids, phages, virulence markers, and antimicrobial resistance genes in Shiga toxin-producing Escherichia coli by González-Escalona, Narjol, Allard, Marc A, Brown, Eric W, Sharma, Shashi, Hoffmann, Maria

“…Whole genome sequencing can provide essential public health information. However, it is now known that widely used short-read methods have the potential to…”
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The use of next generation sequencing for improving food safety: Translation into practice by Jagadeesan, Balamurugan, Gerner-Smidt, Peter, Allard, Marc W., Leuillet, Sébastien, Winkler, Anett, Xiao, Yinghua, Chaffron, Samuel, Van Der Vossen, Jos, Tang, Silin, Katase, Mitsuru, McClure, Peter, Kimura, Bon, Ching Chai, Lay, Chapman, John, Grant, Kathie

“…Next Generation Sequencing (NGS) combined with powerful bioinformatic approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of single…”
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The Future of Whole-Genome Sequencing for Public Health and the Clinic by Allard, Marc W

“…An American Society for Microbiology (ASM) conference titled the Conference on Rapid Next-Generation Sequencing and Bioinformatic Pipelines for Enhanced…”
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Early Recurrence After Hepatectomy for Colorectal Liver Metastases: What Optimal Definition and What Predictive Factors? by Imai, Katsunori, Allard, Marc‐Antoine, Benitez, Carlos Castro, Vibert, Eric, Sa Cunha, Antonio, Cherqui, Daniel, Castaing, Denis, Bismuth, Henri, Baba, Hideo, Adam, René

“…Background. The purpose of this study was to determine the optimal definition and elucidate the predictive factors of early recurrence after surgery for…”
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Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database by Allard, Marc W, Strain, Errol, Melka, David, Bunning, Kelly, Musser, Steven M, Brown, Eric W, Timme, Ruth

“…The FDA has created a United States-based open-source whole-genome sequencing network of state, federal, international, and commercial partners. The…”
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Clinical Significance of Spontaneous Portosystemic Shunts in Living Donor Liver Transplantation by Allard, Marc‐Antoine, Akamatsu, Nobuhisa, Kokudo, Takashi, Kobayashi, Kosuke, Kaneko, Junichi, Ishizawa, Takeaki, Arita, Junichi, Hasegawa, Kiyoshi

“…Spontaneous portosystemic shunts (SPSS) are commonly observed in patients undergoing living donor liver transplantation (LDLT); however, their impact on the…”
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Recurrence of hepatocellular carcinoma after liver transplantation: Is there a place for resection? by Fernandez‐Sevilla, Elena, Allard, Marc‐Antoine, Selten, Jasmijn, Golse, Nicolas, Vibert, Eric, Sa Cunha, Antonio, Cherqui, Daniel, Castaing, Denis, Adam, René

“…Recurrence of hepatocellular carcinoma (HCC) after liver transplantation (LT) is widely considered as a terminal condition. Therefore, the role of surgery is…”
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Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates by Lomonaco, Sara, Crawford, Matthew A, Lascols, Christine, Timme, Ruth E, Anderson, Kevin, Hodge, David R, Fisher, Debra J, Pillai, Segaran P, Morse, Stephen A, Khan, Erum, Hughes, Molly A, Allard, Marc W, Sharma, Shashi K

“…The emergence and dissemination of carbapenemases, bacterial enzymes able to inactivate most β-lactam antibiotics, in Enterobacteriaceae is of increasing…”
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Ideal Surgical Margin to Prevent Early Recurrence After Hepatic Resection for Hepatocellular Carcinoma by Nitta, Hidetoshi, Allard, Marc-Antoine, Sebagh, Mylène, Golse, Nicolas, Ciacio, Oriana, Pittau, Gabriella, Vibert, Eric, Sa Cunha, Antonio, Cherqui, Daniel, Castaing, Denis, Bismuth, Henri, Baba, Hideo, Adam, René

“…Backgrounds and Aims Postoperative early recurrence after hepatic resection for hepatocellular carcinoma (HCC) poses a challenge to surgeons, and the effect of…”
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Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States by Chen, Yi, Luo, Yan, Curry, Phillip, Timme, Ruth, Melka, David, Doyle, Matthew, Parish, Mickey, Hammack, Thomas S, Allard, Marc W, Brown, Eric W, Strain, Errol A

“…A listeriosis outbreak in the United States implicated contaminated ice cream produced by one company, which operated 3 facilities. We performed single…”
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In situ normothermic regional perfusion versus ex situ normothermic machine perfusion in liver transplantation from donation after circulatory death by Mohkam, Kayvan, Nasralla, David, Mergental, Hynek, Muller, Xavier, Butler, Andrew, Jassem, Wayel, Imber, Charles, Monbaliu, Diethard, Perera, M. Thamara P. R., Laing, Richard W., García‐Valdecasas, Juan Carlos, Paul, Andreas, Dondero, Federica, Cauchy, François, Savier, Eric, Scatton, Olivier, Robin, Fabien, Sulpice, Laurent, Bucur, Petru, Salamé, Ephrem, Pittau, Gabriella, Allard, Marc‐Antoine, Pradat, Pierre, Rossignol, Guillaume, Mabrut, Jean‐Yves, Ploeg, Rutger J., Friend, Peter J., Mirza, Darius F., Lesurtel, Mickaël

“…In situ normothermic regional perfusion (NRP) and ex situ normothermic machine perfusion (NMP) aim to improve the outcomes of liver transplantation (LT) using…”
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Phylogenetic and antimicrobial resistance gene analysis of Salmonella Typhimurium strains isolated in Brazil by whole genome sequencing by Almeida, Fernanda, Seribelli, Amanda Aparecida, Medeiros, Marta Inês Cazentini, Rodrigues, Dália Dos Prazeres, de MelloVarani, Alessandro, Luo, Yan, Allard, Marc W, Falcão, Juliana Pfrimer

“…Whole genome sequencing (WGS) has been used as a powerful technology for molecular epidemiology, surveillance, identification of species and serotype,…”
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On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004 by Allard, Marc W, Luo, Yan, Strain, Errol, Pettengill, James, Timme, Ruth, Wang, Charles, Li, Cong, Keys, Christine E, Zheng, Jie, Stones, Robert, Wilson, Mark R, Musser, Steven M, Brown, Eric W

“…Facile laboratory tools are needed to augment identification in contamination events to trace the contamination back to the source (traceback) of Salmonella…”
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An economic evaluation of the Whole Genome Sequencing source tracking program in the U.S by Brown, Brad, Allard, Marc, Bazaco, Michael C, Blankenship, Joseph, Minor, Travis

“…The U.S. Food and Drug Administration (FDA) created the GenomeTrakr Whole Genome Sequencing (WGS) Network in 2013, as a tool to improve food safety. This study…”
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Genomics of foodborne pathogens for microbial food safety by Allard, Marc W, Bell, Rebecca, Ferreira, Christina M, Gonzalez-Escalona, Narjol, Hoffmann, Maria, Muruvanda, Tim, Ottesen, Andrea, Ramachandran, Padmini, Reed, Elizabeth, Sharma, Shashi, Stevens, Eric, Timme, Ruth, Zheng, Jie, Brown, Eric W

“…[Display omitted] •Genetic data makes comparisons transparent, for broad sharing across the disciplines.•US FDA in combination with the NCBI developed the…”
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Treatment strategies to resectable metachronous colorectal liver metastases after adjuvant oxaliplatin‐based chemotherapy for primary colorectal cancer by Julio, Camille, Benoist, Stephane, Allard, Marc‐Antoine, Navarro, Francis, Pessaux, Patrick, Sa Cunha, Antonio, Brouquet, Antoine

“…Background outcome of patients who develop resectable metachronous colorectal liver metastases (CLM) after adjuvant oxaliplatin‐based chemotherapy for Stage…”
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High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach by Allard, Marc W, Luo, Yan, Strain, Errol, Li, Cong, Keys, Christine E, Son, Insook, Stones, Robert, Musser, Steven M, Brown, Eric W

“…Next-Generation Sequencing (NGS) is increasingly being used as a molecular epidemiologic tool for discerning ancestry and traceback of the most complicated,…”
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Core Genome Multilocus Sequence Typing for Identification of Globally Distributed Clonal Groups and Differentiation of Outbreak Strains of Listeria monocytogenes by Chen, Yi, Gonzalez-Escalona, Narjol, Hammack, Thomas S, Allard, Marc W, Strain, Errol A, Brown, Eric W

“…Many listeriosis outbreaks are caused by a few globally distributed clonal groups, designated clonal complexes or epidemic clones, of Listeria monocytogenes,…”
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Prevalence of efflux pump and heavy metal tolerance encoding genes among Salmonella enterica serovar Infantis strains from diverse sources in Brazil by Vilela, Felipe Pinheiro, Rodrigues, Dália Dos Prazeres, Allard, Marc William, Falcão, Juliana Pfrimer

“…Salmonella enterica subspecies enterica serovar Infantis (S. Infantis) is a non-typhoid, zoonotic and foodborne serovar with worldwide distribution, and often…”
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Indocyanine Green Fluorescence Imaging to Predict Graft Survival After Orthotopic Liver Transplantation: A Pilot Study by Dousse, Damien, Vibert, Eric, Nicolas, Quentin, Terasawa, Muga, Cano, Luis, Allard, Marc‐Antoine, Salloum, Chady, Ciacio, Oriana, Pittau, Gabriella, Sa Cunha, Antonio, Cherqui, Daniel, Adam, René, Samuel, Didier, Vignon‐Clementel, Irene, Golse, Nicolas

“…The incidence of primary nonfunction (PNF) after liver transplantation (LT) remains a major concern with the increasing use of marginal grafts. Indocyanine…”
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