Search Results - "ADAI, Alex T"

miRNA Biomarkers in Cyst Fluid Augment the Diagnosis and Management of Pancreatic Cysts by MATTHAEI, Hanno, WYLIE, Dennis, ADAI, Alex T, HRUBAN, Ralph H, SZAFRANSKA-SCHWARZBACH, Anna E, MAITRA, Anirban, LLOYD, Maura B, DAL MOLIN, Marco, KEMPPAINEN, Jon, MAYO, Skye C, WOLFGANG, Christopher L, SCHULICK, Richard D, LANGFIELD, Laura, ANDRUSS, Bernard F

“…The diagnosis of pancreatic cystic lesions has increased dramatically. Most are benign, whereas some, such as intraductal papillary mucinous neoplasms (IPMN),…”
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Targeted, High-Depth, Next-Generation Sequencing of Cancer Genes in Formalin-Fixed, Paraffin-Embedded and Fine-Needle Aspiration Tumor Specimens by Hadd, Andrew G, Houghton, Jeff, Choudhary, Ashish, Sah, Sachin, Chen, Liangjing, Marko, Adam C, Sanford, Tiffany, Buddavarapu, Kalyan, Krosting, Julie, Garmire, Lana, Wylie, Dennis, Shinde, Rupali, Beaudenon, Sylvie, Alexander, Erik K, Mambo, Elizabeth, Adai, Alex T, Latham, Gary J

“…Implementation of highly sophisticated technologies, such as next-generation sequencing (NGS), into routine clinical practice requires compatibility with…”
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TRPS1 targeting by miR-221/222 promotes the epithelial-to-mesenchymal transition in breast cancer by Stinson, Susanna, Lackner, Mark R, Adai, Alex T, Yu, Nancy, Kim, Hyo-Jin, O'Brien, Carol, Spoerke, Jill, Jhunjhunwala, Suchit, Boyd, Zachary, Januario, Thomas, Newman, Robert J, Yue, Peng, Bourgon, Richard, Modrusan, Zora, Stern, Howard M, Warming, Søren, de Sauvage, Frederic J, Amler, Lukas, Yeh, Ru-Fang, Dornan, David

“…The basal-like subtype of breast cancer has an aggressive clinical behavior compared to that of the luminal subtype. We identified the microRNAs (miRNAs)…”
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A Probabilistic Functional Network of Yeast Genes by Lee, Insuk, Date, Shailesh V., Adai, Alex T., Marcotte, Edward M.

“…A conceptual framework for integrating diverse functional genomics data was developed by reinterpreting experiments to provide numerical likelihoods that genes…”
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Global microRNA expression profiling of microdissected tissues identifies miR-135b as a novel biomarker for pancreatic ductal adenocarcinoma by Munding, Johanna B., Adai, Alex T., Maghnouj, Abdelouahid, Urbanik, Aleksandra, Zöllner, Hannah, Liffers, Sven T., Chromik, Ansgar M., Uhl, Waldemar, Szafranska-Schwarzbach, Anna E., Tannapfel, Andrea, Hahn, Stephan A.

“…Pancreatic ductal adenocarcinoma (PDAC) is known for its poor prognosis resulting from being diagnosed at an advanced stage. Accurate early diagnosis and new…”
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A novel mean-centering method for normalizing microRNA expression from high-throughput RT-qPCR data by Wylie, Dennis, Shelton, Jeffrey, Choudhary, Ashish, Adai, Alex T

“…Normalization is critical for accurate gene expression analysis. A significant challenge in the quantitation of gene expression from biofluids samples is the…”
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CSRDB: a small RNA integrated database and browser resource for cereals by Johnson, Cameron, Bowman, Lewis, Adai, Alex T, Vance, Vicki, Venkatesan Sundaresan

“…Plant small RNAs (smRNAs), which include microRNAs (miRNAs), short interfering RNAs (siRNAs) and trans-acting siRNAs (ta-siRNAs), are emerging as significant…”
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Comparative whole genome transcriptome analysis of three Plasmodium falciparum strains by Llinás, Manuel, Bozdech, Zbynek, Wong, Edith D., Adai, Alex T., DeRisi, Joseph L.

“…Gene expression patterns have been demonstrated to be highly variable between similar cell types, for example lab strains and wild strains of Saccharomyces…”
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miR-221/222 targeting of trichorhinophalangeal 1 (TRPS1) promotes epithelial-to-mesenchymal transition in breast cancer by Stinson, Susanna, Lackner, Mark R, Adai, Alex T, Yu, Nancy, Kim, Hyo-Jin, O'Brien, Carol, Spoerke, Jill, Jhunjhunwala, Suchit, Boyd, Zachary, Januario, Thomas, Newman, Robert J, Yue, Peng, Bourgon, Richard, Modrusan, Zora, Stern, Howard M, Warming, Søren, de Sauvage, Frederic J, Amler, Lukas, Yeh, Ru-Fang, Dornan, David

“…Compared with the luminal subtype, the basal-like subtype of breast cancer has an aggressive clinical behavior, but the reasons for this difference between the…”
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CSRDB: a small RNA integrated database and browser resource for cereals by Johnson, Cameron, Bowman, Lewis, Adai, Alex T, Vance, Vicki, Sundaresan, Venkatesan

“…Plant small RNAs (smRNAs), which include microRNAs (miRNAs), short interfering RNAs (siRNAs) and trans-acting siRNAs (ta-siRNAs), are emerging as significant…”
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LGL: Creating a Map of Protein Function with an Algorithm for Visualizing Very Large Biological Networks by Adai, Alex T., Date, Shailesh V., Wieland, Shannon, Marcotte, Edward M.

“…Networks are proving to be central to the study of gene function, protein–protein interaction, and biochemical pathway data. Visualization of networks is…”
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A MicroRNA-Based Test Improves Endoscopic Ultrasound–Guided Cytologic Diagnosis of Pancreatic Cancer by Brand, Randall E, Adai, Alex T, Centeno, Barbara A, Lee, Linda S, Rateb, George, Vignesh, Shivakumar, Menard, Charles, Wiechowska–Kozłowska, Anna, Bołdys, Hubert, Hartleb, Marek, Sanders, Michael K, Munding, Johanna B, Tannapfel, Andrea, Hahn, Stephan A, Stefańczyk, Ludomir, Tsongalis, Gregory J, Whitcomb, David C, Conwell, Darwin L, Morisset, Jean A, Gardner, Timothy B, Gordon, Stuart R, Suriawinata, Arief A, Lloyd, Maura B, Wylie, Dennis, Labourier, Emmanuel, Andruss, Bernard F, Szafranska–Schwarzbach, Anna E

“…Background & Aims Endoscopic ultrasound–guided fine-needle aspiration (EUS-FNA) in combination with cytopathology is the optimal method for diagnosis and…”
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Evaluation of an integrated clinical workflow for targeted next-generation sequencing of low-quality tumor DNA using a 51-gene enrichment panel by Choudhary, Ashish, Mambo, Elizabeth, Sanford, Tiffany, Boedigheimer, Michael, Twomey, Brian, Califano, Joseph, Hadd, Andrew, Oliner, Kelly S, Beaudenon, Sylvie, Latham, Gary J, Adai, Alex T

“…Improvements in both performance and cost for next-generation sequencing (NGS) have spurred its rapid adoption for clinical applications. We designed and…”
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Development of a miRNA-based diagnostic assay for pancreatic ductal adenocarcinoma by Szafranska-Schwarzbach, Anna E, Adai, Alex T, Lee, Linda S, Conwell, Darwin L, Andruss, Bernard F

“…Diagnosis of pancreatic cancer remains a clinical challenge. Both chronic pancreatitis and pancreatic cancer may present with similar symptoms and similar…”
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Abstract A31: Prognostic microRNA biomarkers for recurrence of stage II colorectal cancer by Sanford, Tiffany, Adai, Alex T., Doleshal, Martina, Langfield, Laura, Choudhury, Bhavna, LeBourgeois, Paul, Pappas, Todd, Mambo, Elizabeth

“…Abstract Reliable prediction of recurrence in stage II colorectal cancer (CRC) patients is a major unresolved clinical need as recurrence is often the ultimate…”
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