Search Results - "A. A. Shishkin"

Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus by Quinodoz, Sofia A., Ollikainen, Noah, Tabak, Barbara, Palla, Ali, Schmidt, Jan Marten, Detmar, Elizabeth, Lai, Mason M., Shishkin, Alexander A., Bhat, Prashant, Takei, Yodai, Trinh, Vickie, Aznauryan, Erik, Russell, Pamela, Cheng, Christine, Jovanovic, Marko, Chow, Amy, Cai, Long, McDonel, Patrick, Garber, Manuel, Guttman, Mitchell

“…Eukaryotic genomes are packaged into a 3-dimensional structure in the nucleus. Current methods for studying genome-wide structure are based on proximity…”
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RNA-RNA Interactions Enable Specific Targeting of Noncoding RNAs to Nascent Pre-mRNAs and Chromatin Sites by Engreitz, Jesse M., Sirokman, Klara, McDonel, Patrick, Shishkin, Alexander A., Surka, Christine, Russell, Pamela, Grossman, Sharon R., Chow, Amy Y., Guttman, Mitchell, Lander, Eric S.

“…Intermolecular RNA-RNA interactions are used by many noncoding RNAs (ncRNAs) to achieve their diverse functions. To identify these contacts, we developed a…”
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Genetic and epigenetic fine mapping of causal autoimmune disease variants by Farh, Kyle Kai-How, Marson, Alexander, Zhu, Jiang, Kleinewietfeld, Markus, Housley, William J., Beik, Samantha, Shoresh, Noam, Whitton, Holly, Ryan, Russell J. H., Shishkin, Alexander A., Hatan, Meital, Carrasco-Alfonso, Marlene J., Mayer, Dita, Luckey, C. John, Patsopoulos, Nikolaos A., De Jager, Philip L., Kuchroo, Vijay K., Epstein, Charles B., Daly, Mark J., Hafler, David A., Bernstein, Bradley E.

“…Genome-wide association studies have identified loci underlying human diseases, but the causal nucleotide changes and mechanisms remain largely unknown. Here…”
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Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs by Chen, Jenny, Shishkin, Alexander A, Zhu, Xiaopeng, Kadri, Sabah, Maza, Itay, Guttman, Mitchell, Hanna, Jacob H, Regev, Aviv, Garber, Manuel

“…Recent advances in transcriptome sequencing have enabled the discovery of thousands of long non-coding RNAs (lncRNAs) across many species. Though several…”
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Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells by Gifford, Casey A., Ziller, Michael J., Gu, Hongcang, Trapnell, Cole, Donaghey, Julie, Tsankov, Alexander, Shalek, Alex K., Kelley, David R., Shishkin, Alexander A., Issner, Robbyn, Zhang, Xiaolan, Coyne, Michael, Fostel, Jennifer L., Holmes, Laurie, Meldrim, Jim, Guttman, Mitchell, Epstein, Charles, Park, Hongkun, Kohlbacher, Oliver, Rinn, John, Gnirke, Andreas, Lander, Eric S., Bernstein, Bradley E., Meissner, Alexander

“…Differentiation of human embryonic stem cells (hESCs) provides a unique opportunity to study the regulatory mechanisms that facilitate cellular transitions in…”
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Disturbance of Organizational Equilibrium during the Change of Ancient Tetrapod Communities: Its Manifestations at the Middle–Late Permian Transition by Shishkin, M. A.

“…The evolutionary transition of a living organization to a new stable state begins with the disturbance of its previous equilibrium and, thus, with an increase…”
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Erratum to: On Traces of Non-Equilibrium States in the Evolution of Terrestrial Vertebrate Communities across the Paleozoic–Mesozoic Boundary by Shishkin, M. A.

“…An Erratum to this paper has been published: https://doi.org/10.1134/S0031030121350045…”
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On Traces of Non-Equilibrium States in the Evolution of Terrestrial Vertebrate Communities across the Paleozoic–Mesozoic Boundary by Shishkin, M. A.

“…Evolutionary change in a living system starts with a disturbance to its equilibrium and an increase in its internal disorderliness. Typical manifestations of…”
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Exponential Synthesis in the Kernel of a q-Sided Convolution Operator by Tatarkin, A. A., Shishkin, A. B.

“…The traditional approach to the exponential synthesis problem for the space of solutions of a homogeneous convolution-type equation in a convex domain assumes…”
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Environment-induced overheating phenomena in Au-nanowire based Josephson junctions by Skryabina, O. V., Bakurskiy, S. V., Shishkin, A. G., Klimenko, A. A., Napolskii, K. S., Klenov, N. V., Soloviev, I. I., Ryazanov, V. V., Golubov, A. A., Roditchev, D., Kupriyanov, M. Yu, Stolyarov, V. S.

“…Unlike conventional planar Josephson junctions, nanowire-based devices have a bridge geometry with a peculiar coupling to environment that can favor…”
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Numerical and experimental study of aerosol dispersion in the Do728 aircraft cabin by Schmeling, D., Shishkin, A., Schiepel, D., Wagner, C.

“…The dispersion of aerosols originating from one source, the ‘index’ passenger, within the cabin of the aircraft Do728 is studied experimentally using an…”
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Speech Enhancement with Generative Diffusion Models by Girfanov, O. V., Shishkin, A. G.

“…An alternative approach to speech denoising using generative diffusion models that model the distribution of training data is proposed. In recent years, such…”
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Modeling of Thermogasdynamics and Thermal Processes of Volatile Halides of Elements of III, IV and VI Groups in Thermal Plasma of RF-IC Discharge at Atmospheric Pressure by Shabarova, L. V., Kornev, R. A., Ermakov, A. A., Shkrunin, V. E., Shishkin, A. I., Belov, A. A., Kalyasov, P. S.

“…A mathematical model has been proposed and verified, based on the combination of thermodynamic calculations of equilibrium plasma and CFD-modeling of the…”
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Metal-Coated Cenospheres Obtained via Magnetron Sputter Coating: A New Precursor for Syntactic Foams by Shishkin, A., Hussainova, I., Kozlov, V., Lisnanskis, M., Leroy, P., Lehmhus, D.

“…Syntactic foams (SFs) and metal matrix syntactic foams (MMSFs) represent an advanced type of metal matrix composites (MMCs) based on hollow microspheres as…”
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Genome rearrangements caused by interstitial telomeric sequences in yeast by Aksenova, Anna Y., Greenwell, Patricia W., Dominska, Margaret, Shishkin, Alexander A., Kim, Jane C., Petes, Thomas D., Mirkin, Sergei M.

“…Interstitial telomeric sequences (ITSs) are present in many eukaryotic genomes and are linked to genome instabilities and disease in humans. The mechanisms…”
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Heat Transfer in a Channel with Ribbed Twisted Tapes by Tarasevich, S. E., Shishkin, A. V., Giniyatullin, A. A.

“…The results of a study on heat transfer in a channel with a ribbed twisted tape with s / d = 2.5–4 are presented. Ribs 0.5, 1.0, or 1.5 mm high installed on…”
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Reaction-driven Ion Exchange of Copper into Zeolite SSZ-13 by Clemens, A. K. S, Shishkin, A, Carlsson, P.-A, Skoglundh, M, Martínez-Casado, F. J, Matĕj, Z, Balmes, O, Härelind, H

“…We have used several techniques to characterize Cu-SSZ-13 before and after exposure to reaction conditions relevant for NO reduction by NH3–SCR to address the…”
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Segmentation of Noisy Speech Signals by Protserov, S. D., Shishkin, A. G.

“…One of the most important problems in digital speech-signal processing is distinguishing segments of active speech and of background noise or silence in an…”
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Dynamic Adsorption and Desorption of Phenol on Activated Carbon in Media of Sub- and Supercritical Water by Fedyaeva, O. N., Shishkin, A. V., Vostrikov, A. A.

“…The results of studying the dynamic adsorption of phenol by activated carbon (AC) in fluid media of liquid, subcritical, and supercritical water (26°C and 0.1…”
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Symmetric representations of holomorphic functions by Shishkin, A. V.

“…In this article a class of symmetric functions is defined and used in some special representation of holomorphic functions. This representation plays an…”
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